GeneralNGS

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Rory Kirchner edited this page Feb 7, 2018 · 3 revisions

Downloading from Basespace via the command line

Use this downloader:

https://support.basespace.illumina.com/knowledgebase/articles/403618-python-run-downloader

Figuring out what sequencer was used from FASTQ read names

(via stackoverflow)

AAXX = Genome Analyzer 
BCXX = HiSeq v1.5 
ACXX = HiSeq High-Output v3 
ANXX = HiSeq High-Output v4 
ADXX = HiSeq RR v1 
AMXX, BCXX =HiSeq RR v2 
ALXX = HiSeqX 
BGXX, AGXX = High-Output NextSeq 
AFXX = Mid-Output NextSeq 
5 letter/number = MiSeq