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52 Open 57 Closed
52 Open 57 Closed
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Issues list

README should link to specific tutorials
#194 opened Jun 28, 2017 by iskandr
Add MHCflurry option to MHC predictor enhancement
#188 opened May 31, 2017 by ihodes
1
Need quickstart guide for running on Secotrec
#182 opened Apr 27, 2017 by julia326
--results-path should verify in CLI that path is absolute enhancement
#180 opened Apr 10, 2017 by ihodes
Update README to point at Secotrec + get rid of disco.sh docs enhancement
#179 opened Apr 7, 2017 by ihodes
STAR OOM bug
#174 opened Mar 22, 2017 by ihodes
1
Make epidisco workflows as compatible as possible across different dev versions quality-of-life
#170 opened Mar 8, 2017 by armish
Update README link to ketrew+coclobas instructions bug
#156 opened Feb 14, 2017 by ryan-williams
Note which arguments are required in the cmdliner docs docs enhancement
#154 opened Feb 14, 2017 by ihodes
Our FASTQ CLI-parsing can potentially lead to subtle errors bug enhancement
#152 opened Feb 10, 2017 by ihodes
CSV manifest file enhancement
#149 opened Feb 10, 2017 by ihodes
Handle errors in new NFS server creation gracefully bug
#147 opened Feb 8, 2017 by tavinathanson
@tavinathanson
Use smaller example BAMs for the disco.sh tutorial docs
#146 opened Feb 2, 2017 by ihodes
Implement some heuristics to sanity check the tumor and normal matching enhancement
#143 opened Jan 30, 2017 by armish
Add final filters on variant list enhancement
#140 opened Jan 23, 2017 by ihodes
2
Add tests
#130 opened Dec 30, 2016 by timodonnell
1
Add dataset JSON serialization to the Results Page enhancement
#122 opened Dec 19, 2016 by ihodes
@ihodes @smondet
Update running instructions to account for new Ketrew
#121 opened Dec 16, 2016 by ihodes
@smondet
1
Document (in README) how to submit a job from the CLI docs
#117 opened Dec 13, 2016 by ihodes
Stop using IndelRealignment on RNA enhancement
#108 opened Dec 8, 2016 by ihodes
1
Support specifying Vaxrank report final_reviewer and reviewers through CLI enhancement
#106 opened Dec 6, 2016 by ihodes
Use name of FASTQ samples instead of numbering enhancement
#104 opened Dec 6, 2016 by ihodes
Rewrite report generation using tyXML refactor
#103 opened Dec 6, 2016 by ihodes
@ihodes
Add ADAM flagstat to the pipeline enhancement
#98 opened Nov 29, 2016 by ihodes
Add SNAP to pipeline enhancement
#97 opened Nov 29, 2016 by ihodes
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