Create README.md

README.md

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+              _     _________  _______  _______
+             / \   |  _   _  ||_   __ \|_   __ \
+            / _ \  |_/ | | \_|  | |__) | | |__) |
+           / ___ \     | |      |  ___/  |  ___/
+         _/ /   \ \_  _| |_    _| |_    _| |_
+        |____| |____||_____|  |_____|  |_____|
+
+## ATPP command line version
+
+ATPP (Automatic Tractography-based Parcellation Pipeline)
+
+- Multi-ROI oriented brain parcellation
+- Automatic parallel computing
+- Modular and flexible structure
+- Simple and easy-to-use settings
+
+## Notice
+-  Usage: `bash ATPP.sh batch_list.txt`
+
+
+## Prerequisites:
+===============================================
+
+- Tools:
+    - FSL (with FDT toolbox), SGE and MATLAB (with SPM8)
+- Data files:
+    - T1 image for each subject
+    - b0 image for each subject
+    - images preprocessed by FSL(BedpostX) for each subject
+- Directory structure:
+```
+     Working_dir
+     |-- sub1
+     |   |-- T1_sub1.nii
+     |   |-- b0_sub1.nii
+     |-- ...
+     |-- subN
+     |   |-- T1_subN.nii
+     |   |-- b0_subN.nii
+     |-- ROI
+     |   |-- ROI_L.nii
+     |   `-- ROI_R.nii
+     `-- log 
+```
+===============================================
+