Updated _config.yml file

_config.yml

@@ -1,55 +1,67 @@
 # Welcome to Jekyll!
 #
-# This config file is meant for settings that affect your whole blog, values
-# which you are expected to set up once and rarely edit after that. If you find
-# yourself editing this file very often, consider using Jekyll's data files
-# feature for the data you need to update frequently.
-#
-# For technical reasons, this file is *NOT* reloaded automatically when you use
-# 'bundle exec jekyll serve'. If you change this file, please restart the server process.
-#
-# If you need help with YAML syntax, here are some quick references for you:
-# https://learn-the-web.algonquindesign.ca/topics/markdown-yaml-cheat-sheet/#yaml
-# https://learnxinyminutes.com/docs/yaml/
-#
-# Site settings
-# These are used to personalize your new site. If you look in the HTML files,
-# you will see them accessed via {{ site.title }}, {{ site.email }}, and so on.
-# You can create any custom variable you would like, and they will be accessible
-# in the templates via {{ site.myvariable }}.
-
-title: Your awesome title
-email: [email protected]
-description: >- # this means to ignore newlines until "baseurl:"
-  Write an awesome description for your new site here. You can edit this
-  line in _config.yml. It will appear in your document head meta (for
-  Google search results) and in your feed.xml site description.
+
+title:            Bonvin Lab
+locale:           en_US
+url:              https://www.bonvinlab.org
+#url:              http://127.0.0.1:4000/
 baseurl: "" # the subpath of your site, e.g. /blog
-url: "" # the base hostname & protocol for your site, e.g. http://example.com
-twitter_username: jekyllrb
-github_username:  jekyll
+#email: [email protected]
+twitter_username: amjjbonvin
+github_username:  haddocking
+
+# RSS Feed configuration
+name: Bonvin Lab
+description: Webpage of the computational structural biology lab of Alexandre Bonvin
+rss: true
+
 
 # Build settings
 theme: minima
+permalink:   /:categories/:title/
+post_dir: false
+markdown:    kramdown
+sass:
+  sass_dir: _sass
+  style: compressed
 plugins:
-  - jekyll-feed
+- jekyll-feed
+# - jekyll-sitemap
+#- jekyll-coffeescript
+#- jekyll-paginate
 
-# Exclude from processing.
-# The following items will not be processed, by default.
-# Any item listed under the `exclude:` key here will be automatically added to
-# the internal "default list".
-#
-# Excluded items can be processed by explicitly listing the directories or
-# their entries' file path in the `include:` list.
-#
-# exclude:
-#   - .sass-cache/
-#   - .jekyll-cache/
-#   - gemfiles/
-#   - Gemfile
-#   - Gemfile.lock
-#   - node_modules/
-#   - vendor/bundle/
-#   - vendor/cache/
-#   - vendor/gems/
-#   - vendor/ruby/
+kramdown:
+  auto_ids: true
+  footnote_nr: 1
+  entity_output: as_char
+  toc_levels: 1..6
+
+
+# Site owner
+owner:
+  name: Alexandre Bonvin
+  avatar: bio-haddock.png
+  bio: "Computational Structural Biology group focusing on dissecting, understanding and predicting biomolecular interactions at the molecular level."
+  email: [email protected]
+  youtube: haddocking
+  google:
+    analytics: G-RNH61RX63Z
+    verify:
+    ad-client:
+    ad-slot:
+  github: haddocking
+
+
+include: [".htaccess"]
+exclude: ["lib", "config.rb", "Capfile", "config", "log", "Rakefile", "Rakefile.rb", "tmp", "less", "*.sublime-project", "*.sublime-workspace", "test", "spec", "Gruntfile.js", "package.json", "node_modules", "Gemfile", "Gemfile.lock", "LICENSE", "README.md", "_utilities", "vendor", "ruby"]
+
+
+# Github Specific Settings that *cannot* be changed
+# To ensure proper reproducibility
+# https://help.github.com/articles/configuring-jekyll/
+gist:
+  noscript: false
+github: [metadata]
+highlighter: rouge
+incremental: false
+lsi: false