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fix: beagle AP field#224

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nicholema wants to merge 12 commits intomastergymrek-lab/TRTools:masterfrom nichole_mergeSTRgymrek-lab/TRTools:nichole_mergeSTRCopy head branch name to clipboard

+126-6

Commits

Commits on Jul 22, 2024

• add format AP

  nicholema

  committed
  73c1528

Commits on Jul 23, 2024

• add AP field in mergeSTR hipstr output

  nicholema

  committed
  5eb028e

Commits on Jul 25, 2024

• delete duplicate test files

  nicholema

  committed
  92a258c

• add AP field check

  nicholema

  committed
  2d367dd

• add hipstr_imputed_merged.vcf.gz

  nicholema

  committed
  3bff4f2

• handle gz file name

  nicholema

  committed
  c701a8e

Commits on Jul 29, 2024

• Only merge Beagle-specific fields if alleles are identical and all files from Beagle

  gymreklab

  committed
  6a4f89e

Commits on Jul 30, 2024

• add test to check merge beagle/non beagle, different ALT allele and AP field

  nicholema

  committed
  e9f9021

Commits on Aug 1, 2024

• discard IMP filed for now

  nicholema

  committed
  0e4fdb0

• delete tmp test file

  nicholema

  committed
  e2e1761

Commits on Aug 5, 2024

• add test_CheckIdenticalAlleleOrder

  nicholema

  committed
  1c895f2

• Restored hipstr_merged.vcf from previous commit and added it to the current commit

  nicholema

  committed
  92671be