Update README.md #235
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| # ----------------------- | |
| # | |
| # Run a full build-and-test from the git repo | |
| # using a combination of conda and pip to install | |
| # all optional dependencies. | |
| # | |
| # This is the 'full' test suite. | |
| # | |
| # ----------------------- | |
| name: Build and test | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| conda: | |
| name: Python ${{ matrix.python-version }} (${{ matrix.os }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: | |
| - macOS | |
| - Ubuntu | |
| python-version: | |
| - "3.8" | |
| - "3.9" | |
| - "3.10" | |
| - "3.11" | |
| runs-on: ${{ matrix.os }}-latest | |
| # this is needed for conda environments to activate automatically | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - name: Get source code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - name: Cache conda packages | |
| uses: actions/cache@v1 | |
| env: | |
| # increment to reset cache | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: ${{ runner.os }}-conda-${{ matrix.python-version}}-${{ env.CACHE_NUMBER }} | |
| - name: Configure conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: test | |
| channels: conda-forge | |
| python-version: ${{ matrix.python-version }} | |
| # this is needed for caching to work properly: | |
| use-only-tar-bz2: true | |
| - name: Conda info | |
| run: conda info --all | |
| - name: Install build dependencies | |
| run: | | |
| conda install --quiet --yes \ | |
| c-compiler \ | |
| coverage \ | |
| cython \ | |
| lalsuite \ | |
| numpy \ | |
| pip \ | |
| setuptools \ | |
| ; | |
| python -m pip install -r requirements.txt | |
| - name: Install SBank | |
| # notes: | |
| # - `--coverage` enables coverage reporting for the C library | |
| # - CYTHON_LINETRACE=1 enables coverage reporting for the Cython library | |
| # - we use `--editable .` so that the Cython library is installed in-place, | |
| # which helps with the coverage | |
| # - `-vv` gives us verbose output for the compilation, | |
| # - `--no-build-isolation` tells pip not to ignore the already-installed | |
| # build requirements, which greatly cuts down on the output from `-vv` | |
| run: CFLAGS="${CFLAGS} --coverage" CYTHON_LINETRACE=1 python -m pip install --editable . --no-build-isolation -vv | |
| - name: Package list | |
| run: conda list --name test | |
| - name: Run test suite | |
| run: python -m pytest -ra --color yes --pyargs sbank --cov sbank --cov-report= --junitxml=pytest.xml | |
| - name: Run command-line tests | |
| run: | | |
| for script in ${CONDA_PREFIX}/bin/sbank*; do | |
| python -m coverage run \ | |
| --append \ | |
| --source=sbank \ | |
| ${script} --help | |
| done | |
| - name: Run short sbank executable tests | |
| run: bash tools/test_sbank.sh | |
| - name: Coverage report | |
| run: python -m coverage report --show-missing | |
| - name: Prepare codecov upload | |
| run: | | |
| # covert report to XML (codecov can't handle sqlite, probably) | |
| python -m coverage xml | |
| rm -fv .coverage | |
| - name: Publish coverage to Codecov | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| flags: ${{ runner.os }},python${{ matrix.python-version }} | |
| - name: Upload test results | |
| if: always() | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: pytest-${{ matrix.os }}-${{ matrix.python-version }} | |
| path: pytest.xml |