Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Compressed waveforms bank workflow #4969

Open
wants to merge 18 commits into
base: master
Choose a base branch
from
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
64 changes: 64 additions & 0 deletions .github/workflows/bank-compress-workflow.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,64 @@
name: compress waveforms into a bank using pegasus + condor

on: [push, pull_request]

concurrency:
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
cancel-in-progress: true

jobs:
build:
runs-on: ubuntu-20.04
timeout-minutes: 90
steps:
- uses: actions/checkout@v1
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: '3.10'
- name: install condor
run: |
wget -qO - https://research.cs.wisc.edu/htcondor/ubuntu/HTCondor-Release.gpg.key | sudo apt-key add -
echo "deb http://research.cs.wisc.edu/htcondor/ubuntu/8.9/focal focal contrib" | sudo tee -a /etc/apt/sources.list
echo "deb-src http://research.cs.wisc.edu/htcondor/ubuntu/8.9/focal focal contrib" | sudo tee -a /etc/apt/sources.list
sudo apt-get -o Acquire::Retries=3 update
sudo apt-get -o Acquire::Retries=3 install minihtcondor
sudo systemctl start condor
sudo systemctl enable condor
- name: install pegasus
run: |
wget -qO - https://download.pegasus.isi.edu/pegasus/gpg.txt | sudo apt-key add -
echo "deb https://download.pegasus.isi.edu/pegasus/ubuntu bionic main" | sudo tee -a /etc/apt/sources.list
sudo apt-get -o Acquire::Retries=3 update
sudo apt-get -o Acquire::Retries=3 install pegasus=5.0.8-1+ubuntu18
- run: sudo apt-get -o Acquire::Retries=3 install *fftw3* intel-mkl*
- name: Install pycbc
run: |
python -m pip install --upgrade 'pip<22.0' setuptools
pip install GitPython # This shouldn't really be needed!
pip install -r requirements.txt
pip install .
- name: installing sbank
run: |
pip install sbank
- name: generating template bank
run: bash -e examples/search/bank.sh
- name: running workflow
run: |
cp examples/tmpltbank/compress_workflow/*.ini ./
bash -e examples/tmpltbank/compress_workflow/gen.sh
cd output
bash -e ../examples/search/submit.sh
python ../examples/search/check_job.py
find submitdir/work/ -type f -name '*.tar.gz' -delete
- name: store log files
if: always()
uses: actions/upload-artifact@v4
with:
name: logs
path: output/submitdir/work
- name: store result page
uses: actions/upload-artifact@v4
with:
name: results
path: html
Loading
Loading