migrate from ligo-segments to igwn-segments (#4999)

bin/all_sky_search/pycbc_add_statmap

@@ -3,11 +3,11 @@
 with more than one ifo combination available. Cluster to keep foreground
 coincs with the highest stat value.
 """
+import igwn_segments as segments
 import numpy as np, argparse, logging, pycbc, pycbc.events, pycbc.io
 import pycbc.version
 import pycbc.conversions as conv
 from pycbc.events import coinc, significance
-from ligo import segments
 import sys, copy
 
 def get_ifo_string(fi):

bin/all_sky_search/pycbc_bin_trigger_rates_dq

@@ -7,7 +7,7 @@ import argparse
 import numpy as np
 import h5py as h5
 
-from ligo.segments import segmentlist
+from igwn_segments import segmentlist
 
 import pycbc
 from pycbc.events import stat as pystat

bin/all_sky_search/pycbc_calculate_psd

@@ -8,7 +8,7 @@ from pycbc.io import HFile
 from pycbc.pool import BroadcastPool as Pool
 from pycbc.fft.fftw import set_measure_level
 from pycbc.workflow import resolve_td_option
-from ligo.segments import segmentlist, segment
+from igwn_segments import segmentlist, segment
 set_measure_level(0)
 
 parser = argparse.ArgumentParser(description=__doc__)

bin/all_sky_search/pycbc_coinc_findtrigs

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 import copy, argparse, logging, numpy, numpy.random
 import shutil, uuid, os.path, atexit
-from ligo.segments import infinity
+from igwn_segments import infinity
 import pycbc
 from pycbc.events import veto, coinc, stat, ranking, cuts
 from pycbc.io import HFile

bin/all_sky_search/pycbc_coinc_hdfinjfind

@@ -5,7 +5,7 @@ files.
 
 import argparse, logging, types, numpy, os.path
 from ligo.lw import lsctables, utils as ligolw_utils
-from ligo import segments
+import igwn_segments as segments
 import pycbc
 from pycbc import events, init_logging
 from pycbc.events import indices_within_segments

bin/all_sky_search/pycbc_combine_statmap

@@ -5,7 +5,7 @@ significant foreground, but leaves the background triggers alone.
 """
 
 import numpy, argparse, logging, pycbc, pycbc.events, pycbc.io, lal
-from ligo import segments
+import igwn_segments as segments
 
 parser = argparse.ArgumentParser()
 pycbc.add_common_pycbc_options(parser)

bin/all_sky_search/pycbc_prepare_xml_for_gracedb

@@ -31,7 +31,7 @@ import lal
 import lal.series
 from ligo.lw import lsctables
 from ligo.lw import utils as ligolw_utils
-from ligo.segments import segment, segmentlist
+from igwn_segments import segment, segmentlist
 
 import pycbc
 from pycbc.io import HFile

bin/all_sky_search/pycbc_sngls_findtrigs

@@ -1,6 +1,6 @@
 #!/usr/bin/env python
 import argparse, logging, h5py, numpy as np
-from ligo.segments import infinity
+from igwn_segments import infinity
 from numpy.random import seed, shuffle
 
 import pycbc

bin/all_sky_search/pycbc_sngls_pastro

@@ -16,7 +16,7 @@ from ligo.lw import lsctables, utils as ligolw_utils
 from pycbc import conversions as conv
 from pycbc.events import veto, stat, ranking, coinc, single as sngl
 from pycbc.io.ligolw import LIGOLWContentHandler
-from ligo.segments import segment, segmentlist
+from igwn_segments import segment, segmentlist
 import matplotlib
 matplotlib.use('agg')
 from matplotlib import pyplot as plt

bin/live/pycbc_live_collate_triggers

@@ -23,7 +23,7 @@ import os
 import logging
 from datetime import datetime, timedelta
 
-from ligo.segments import segmentlist, segment
+from igwn_segments import segmentlist, segment
 
 import pycbc
 from pycbc.io import live as liveio

bin/live/pycbc_live_combine_single_significance_fits

@@ -19,7 +19,7 @@ import argparse
 import logging
 import numpy as np
 
-from ligo.segments import segment, segmentlist
+from igwn_segments import segment, segmentlist
 
 import pycbc
 from pycbc.io.hdf import HFile

bin/minifollowups/pycbc_upload_prep_minifollowup

@@ -23,7 +23,7 @@ import logging
 import re
 import numpy as np
 
-from ligo import segments
+import igwn_segments as segments
 
 from pycbc import init_logging, add_common_pycbc_options
 import pycbc.workflow as wf

bin/plotting/pycbc_page_ifar

@@ -23,7 +23,7 @@ import pylab
 import matplotlib as mpl
 mpl.use('Agg')
 
-from ligo import segments
+import igwn_segments as segments
 
 from pycbc import init_logging, add_common_pycbc_options
 import pycbc.results

bin/plotting/pycbc_page_segtable

@@ -23,7 +23,7 @@ import pycbc.results
 import sys
 import itertools
 
-from ligo import segments
+import igwn_segments as segments
 
 from pycbc.events.veto import get_segment_definer_comments
 from pycbc.results import save_fig_with_metadata

bin/pycbc_gwosc_segment_query

@@ -7,7 +7,7 @@ import argparse
 import shutil
 from urllib.request import urlopen
 
-import ligo.segments
+import igwn_segments
 
 import pycbc
 from pycbc.workflow import SegFile
@@ -31,9 +31,9 @@ def query_gwosc(ifo, segment_name, gps_start_time, duration):
 
     Returns
     ---------
-    segment_list :  ligo.segments.segmentlist
+    segment_list :  igwn_segments.segmentlist
         The interval returned by GWOSC
-    segment_summary :  ligo.segments.segmentlist
+    segment_summary :  igwn_segments.segmentlist
         The segments returned by GWOSC
     """
 
@@ -44,11 +44,11 @@ def query_gwosc(ifo, segment_name, gps_start_time, duration):
     logging.info(response.info())
     json_segment_data = json.loads(response.read())
 
-    summary_segment = ligo.segments.segmentlist([ligo.segments.segment(
+    summary_segment = igwn_segments.segmentlist([igwn_segments.segment(
                                                 json_segment_data['start'],
                                                 json_segment_data['end'])])
 
-    segments = ligo.segments.segmentlist([ligo.segments.segment(
+    segments = igwn_segments.segmentlist([igwn_segments.segment(
                                          x[0],x[1]) for x in json_segment_data['segments']])
 
     return summary_segment, segments

bin/pycbc_make_html_page

@@ -25,7 +25,7 @@ import zipfile
 import codecs
 from jinja2 import Environment, FileSystemLoader
 
-from ligo import segments
+import igwn_segments as segments
 
 import pycbc.results
 from pycbc.results.render import get_embedded_config, render_workflow_html_template, setup_template_render

bin/pycbc_upload_xml_to_gracedb

@@ -32,7 +32,7 @@ import lal
 import lal.series
 from ligo.lw import lsctables
 from ligo.lw import utils as ligolw_utils
-from ligo.segments import segment, segmentlist
+from igwn_segments import segment, segmentlist
 
 import pycbc
 from pycbc.io.gracedb import gracedb_tag_with_version

bin/pygrb/pycbc_grb_inj_finder

@@ -36,8 +36,8 @@ import h5py
 
 from gwdatafind.utils import filename_metadata
 
-from ligo.segments import segmentlist
-from ligo.segments.utils import fromsegwizard
+from igwn_segments import segmentlist
+from igwn_segments.utils import fromsegwizard
 
 from pycbc import add_common_pycbc_options, init_logging
 from pycbc.inject import InjectionSet

bin/pygrb/pycbc_grb_trig_combiner

@@ -32,8 +32,8 @@ import h5py
 
 from gwdatafind.utils import (file_segment, filename_metadata)
 
-from ligo import segments
-from ligo.segments.utils import fromsegwizard
+import igwn_segments as segments
+from igwn_segments.utils import fromsegwizard
 
 from pycbc import add_common_pycbc_options, init_logging
 from pycbc.results.pygrb_postprocessing_utils import template_hash_to_id

bin/pygrb/pycbc_make_offline_grb_workflow

@@ -27,7 +27,7 @@ import logging
 import matplotlib
 matplotlib.use('agg')
 
-from ligo.segments import segment, segmentlistdict
+from igwn_segments import segment, segmentlistdict
 
 from pycbc import init_logging, add_common_pycbc_options
 import pycbc.workflow as _workflow

bin/workflows/pycbc_make_bank_verifier_workflow

@@ -27,7 +27,7 @@ import os
 import argparse
 import shutil
 
-from ligo import segments
+import igwn_segments as segments
 
 from pycbc import add_common_pycbc_options, init_logging
 import pycbc.version

bin/workflows/pycbc_make_inference_plots_workflow

@@ -30,7 +30,7 @@ import sys
 import shlex
 import numpy
 
-from ligo import segments
+import igwn_segments as segments
 
 from pycbc import results, init_logging, add_common_pycbc_options
 from pycbc.results import layout

bin/workflows/pycbc_make_inference_workflow

@@ -27,7 +27,7 @@ import socket
 import sys
 import numpy
 
-from ligo import segments
+import igwn_segments as segments
 
 import pycbc
 import pycbc.workflow.minifollowups as mini

bin/workflows/pycbc_make_offline_search_workflow

@@ -33,8 +33,8 @@ import numpy
 import datetime
 import itertools
 
+import igwn_segments as segments
 import lal
-from ligo import segments
 
 import pycbc.events
 import pycbc.workflow as wf

bin/workflows/pycbc_make_psd_estimation_workflow

@@ -25,7 +25,7 @@ import logging
 import datetime
 import sys
 
-from ligo import segments as _segments
+import igwn_segments as _segments
 import lal
 
 import pycbc

docs/workflow/datafind.rst

@@ -34,7 +34,7 @@ Using this module requires a number of things
 
 * A configuration file (or files) containing the information needed to tell this module how to generate the segments (described below).
 * An initialized instance of the pycbc workflow class, containing the ConfigParser.
-* An ifo-keyed dictionary of ligo.segments.segmentlist instances containing the times that should be analysed for each ifo. See :ref:`workflowsegmentsmod` for documentation of the segments module, which in most cases should be used to obtain this input.
+* An ifo-keyed dictionary of igwn_segments.segmentlist instances containing the times that should be analysed for each ifo. See :ref:`workflowsegmentsmod` for documentation of the segments module, which in most cases should be used to obtain this input.
 
 -------------------------
 Configuration file setup

examples/workflow/dayhopecheck/dayhopecheck.py

@@ -46,7 +46,7 @@
 import os
 import logging
 import argparse
-from ligo import segments
+import igwn_segments as segments
 import pycbc.workflow as _workflow
 
 from ligo.lw import ligolw

pycbc/dq.py

@@ -28,7 +28,7 @@
 import logging
 import json
 import numpy
-from ligo.segments import segmentlist, segment
+from igwn_segments import segmentlist, segment
 from pycbc.frame.gwosc import get_run
 from pycbc.io import get_file
 
@@ -152,7 +152,7 @@ def query_flag(ifo, segment_name, start_time, end_time,
 
     Returns
     ---------
-    segments: ligo.segments.segmentlist
+    segments: igwn_segments.segmentlist
         List of segments
     """
     flag_segments = segmentlist([])
@@ -279,7 +279,7 @@ def query_cumulative_flags(ifo, segment_names, start_time, end_time,
 
     Returns
     ---------
-    segments: ligo.segments.segmentlist
+    segments: igwn_segments.segmentlist
         List of segments
     """
     total_segs = segmentlist([])

pycbc/events/veto.py

@@ -3,8 +3,8 @@
 """
 import logging
 import numpy
+from igwn_segments import segment, segmentlist
 from ligo.lw import table, lsctables, utils as ligolw_utils
-from ligo.segments import segment, segmentlist
 
 logger = logging.getLogger('pycbc.events.veto')
 

pycbc/psd/__init__.py

@@ -15,7 +15,7 @@
 # with this program; if not, write to the Free Software Foundation, Inc.,
 # 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA.
 import copy
-from ligo import segments
+import igwn_segments as segments
 from pycbc.psd.read import *
 from pycbc.psd.analytical import *
 from pycbc.psd.analytical_space import *

pycbc/results/followup.py

@@ -34,7 +34,7 @@
 if 'matplotlib.backends' not in sys.modules:
     matplotlib.use('agg')
 import pylab, mpld3, mpld3.plugins
-from ligo.segments import segment
+from igwn_segments import segment
 from pycbc.io.hdf import HFile
 
 def columns_from_file_list(file_list, columns, ifo, start, end):

pycbc/results/pygrb_plotting_utils.py

@@ -25,7 +25,7 @@
 
 import copy
 import numpy
-from ligo import segments
+import igwn_segments as segments
 from pycbc.results import save_fig_with_metadata
 
 

pycbc/results/pygrb_postprocessing_utils.py

@@ -28,10 +28,10 @@
 import copy
 import numpy
 import h5py
+import igwn_segments as segments
 
 from scipy import stats
-from ligo import segments
-from ligo.segments.utils import fromsegwizard
+from igwn_segments.utils import fromsegwizard
 from pycbc.events.coherent import reweightedsnr_cut
 from pycbc.events import veto
 from pycbc import add_common_pycbc_options

pycbc/workflow/coincidence.py

@@ -30,7 +30,7 @@
 import os
 import logging
 
-from ligo import segments
+import igwn_segments as segments
 
 from pycbc.workflow.core import FileList, make_analysis_dir, Executable, Node, File