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minor fix to comment on gene set exploration command
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obigriffith committed Jun 19, 2024
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2 changes: 1 addition & 1 deletion _posts/0003-05-01-DE_Pathway_Analysis.md
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Expand Up @@ -162,7 +162,7 @@ head(fc.c8.p.up)
head(fc.c8.p.down)

#What if we want to know which specific genes from our DE gene result were found in a specific significant pathway?
#For example, one of the significant pathways from the fc.go.cc.p.down was "GO:0098794 postsynapse" with a reported set.size = 11 genes.
#For example, one significant pathway from fc.go.cc.p.down was "GO:0098794 postsynapse" with set.size = 11 genes.
#Let's extract the postsynapse DE gene results
postsynapse = DE_genes_clean[which(DE_genes_clean$entrez %in% go.cc.gs$`GO:0098794 postsynapse`),]

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