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### CBW RNA-seq analysis (July 17-19th, 2023. Toronto, ON, Canada))

Organized by [Canadian Bioinformatics Workshops (CBW)](https://bioinformatics.ca/) - [Course Site](https://bioinformaticsdotca.github.io/RNA_2021)

**Presentations:**

* [Intructor Introductions](https://github.com/griffithlab/rnabio.org/blob/master/assets/lectures/cbw/2023/full/RNASeq_Module0_Introductions.pdf)
* [Introduction to Cloud Computing (lecture)](https://github.com/griffithlab/rnabio.org/blob/master/assets/lectures/cbw/2023/full/RNASeq_Module0_CloudComputing.pdf)
* [Introduction to RNA Sequencing (lecture)](https://github.com/griffithlab/rnabio.org/blob/master/assets/lectures/cbw/2023/full/RNASeq_Module1_IntrotoRNA.pdf)
* [Introduction to IGV (lecture)](https://github.com/griffithlab/rnabio.org/blob/master/assets/lectures/cbw/2023/full/RNASeq_Module2_IGV_Tutorial_Brief.pdf)
* [Fasta, Fastq, GTF (mini lecture)](https://github.com/griffithlab/rnabio.org/tree/master/assets/lectures/cbw/2023/mini/RNASeq_MiniLecture_01_01_FASTA_FASTQ_GTF.pdf)
* [Indexing (mini lecture)](https://github.com/griffithlab/rnabio.org/tree/master/assets/lectures/cbw/2023/mini/RNASeq_MiniLecture_01_02_Indexing.pdf)
* [Alignment (mini lecture)](https://github.com/griffithlab/rnabio.org/tree/master/assets/lectures/cbw/2023/mini/RNASeq_MiniLecture_02_01_Alignment.pdf)
* [Alignment, assembly, kmers (mini lecture)](https://github.com/griffithlab/rnabio.org/tree/master/assets/lectures/cbw/2023/mini/RNASeq_MiniLecture_02_02_Alignment_vs_Assembly_vs_Kmer.pdf)
* [SAM, BAM, BED (mini lecture)](https://github.com/griffithlab/rnabio.org/tree/master/assets/lectures/cbw/2023/mini/RNASeq_MiniLecture_02_03_SAM_BAM_BED.pdf)
* [Alignment QC (mini lecture)](https://github.com/griffithlab/rnabio.org/tree/master/assets/lectures/cbw/2023/mini/RNASeq_MiniLecture_02_04_alignmentQC.pdf)
* [Abundance Estimation (mini lecture)](https://github.com/griffithlab/rnabio.org/tree/master/assets/lectures/cbw/2023/mini/RNASeq_MiniLecture_03_01_AbundanceEstimation.pdf)
* [HTSeq (mini lecture)](https://github.com/griffithlab/rnabio.org/blob/master/assets/lectures/cbw/2023/mini/RNASeq_MiniLecture_03_02_HTSEQ.pdf)
* [Differential expression (mini lecture)](https://github.com/griffithlab/rnabio.org/tree/master/assets/lectures/cbw/2023/mini/RNASeq_MiniLecture_03_03_DifferentialExpression.pdf)
* [Alignment free analysis with Kallisto (mini lecture)](https://github.com/griffithlab/rnabio.org/tree/master/assets/lectures/cbw/2023/mini/RNASeq_MiniLecture_04_01_AlignmentFreeKallisto.pdf)
* [Alternative expression (mini lecture)](https://github.com/griffithlab/rnabio.org/tree/master/assets/lectures/cbw/2023/mini/RNASeq_MiniLecture_05_01_AlternativeSplicingAnalysis.pdf)


### Advanced Sequencing Technologies & Bioinformatics Analysis (November 7-19, 2022)
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