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Update 0009-05-01-Practical_Exercise_Solutions.md
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Change some wording in Exercise 9 from "results" to "inputs" (confused some people at Toronto workshop)
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igrisch committed Jun 20, 2024
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4 changes: 2 additions & 2 deletions _posts/0009-05-01-Practical_Exercise_Solutions.md
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Expand Up @@ -277,8 +277,8 @@ library(devtools)
# Create phenotype data needed for ballgown analysis
ids=c("HCC1395_normal_rep1","HCC1395_normal_rep2","HCC1395_normal_rep3","HCC1395_tumor_rep1","HCC1395_tumor_rep2","HCC1395_tumor_rep3")
type=c("normal","normal","normal","tumor","tumor","tumor")
results="/home/ubuntu/workspace/rnaseq/practice/expression/stringtie/ref_only/"
path=paste(results,ids,sep="")
inputs="/home/ubuntu/workspace/rnaseq/practice/expression/stringtie/ref_only/"
path=paste(inputs,ids,sep="")
pheno_data=data.frame(ids,type,path)

# Load ballgown data structure and save it to a variable "bg"
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