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Check external APIs

Check external APIs #566

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Check external APIs

Check external APIs #566

Workflow file for this run

.github/workflows/api_status.yml at 509b933
name: Check external APIs
on:
schedule:
- cron: "0 0 * * *"
workflow_dispatch:
jobs:
iedb:
name: "Check IEDB Class I and Class II APIs"
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ['3.7']
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install system dependencies
run: |
sudo apt-get -qq update
sudo apt-get install -y ghostscript
sudo apt-get install -y gcc
sudo apt-get install -y pandoc
pip install setuptools==57
pip install pypandoc==1.7.2
- name: Install Python dependencies
run: |
pip install polars==0.16.18
pip install -e .
- name: List installed packages
run: |
pip list
- name: Run tests
run: python -m unittest api_status_tests/test_iedb.py
netchop:
name: "Check NetChop API"
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ['3.7']
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install system dependencies
run: |
sudo apt-get -qq update
sudo apt-get install -y ghostscript
sudo apt-get install -y gcc
sudo apt-get install -y pandoc
pip install setuptools==57
pip install pypandoc==1.7.2
- name: Install Python dependencies
run: |
pip install polars==0.16.18
pip install -e .
- name: List installed packages
run: |
pip list
- name: Run tests
run: python -m unittest api_status_tests/test_netchop.py
netmhcstabpan:
name: "Check NetMHCstabpan API"
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ['3.7']
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install system dependencies
run: |
sudo apt-get -qq update
sudo apt-get install -y ghostscript
sudo apt-get install -y gcc
sudo apt-get install -y pandoc
pip install setuptools==57
pip install pypandoc==1.7.2
- name: Install Python dependencies
run: |
pip install polars==0.16.18
pip install -e .
- name: List installed packages
run: |
pip list
- name: Run tests
run: python -m unittest api_status_tests/test_netmhc_stab.py
blast:
name: "Check Blast API"
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ['3.7']
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install system dependencies
run: |
sudo apt-get -qq update
sudo apt-get install -y ghostscript
sudo apt-get install -y gcc
sudo apt-get install -y pandoc
pip install setuptools==57
pip install pypandoc==1.7.2
- name: Install Python dependencies
run: |
pip install polars==0.16.18
pip install -e .
- name: List installed packages
run: |
pip list
- name: Run tests
run: python -m unittest api_status_tests/test_blast.py