This codebase accompanies the publication "Genome-wide Association Studies in Pharmacogenomics" (in review).
The scripts included in this repository were used to process data from the GWAS Catalog to analyze statistics regarding genome-wide association studies of pharmacogenomic phenotypes.
Notebook.Rmd contains all code needed to recreate the figures in the publication. The needed data is in data.tar.gz.
First, unpack the data directory
tar -xvzf data.tar.gz
You can run the notebook with Rstudio. The code was written using R 4.1.0.