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Welcome to the peak-tool wiki!

Make sure you have g++ installed on your system

usage:

gunzip gencode.v19.annotation.gtf.gz make ./peak_tool ./test.bed > test.genes

Output: The output is in the following format chrnum peak_mid peak_name peak_score peak_location gene_name strand isomer_name isomer_coding_type tss dist_tss

You can safely ignore the rest of the columns which are used with co-chip peak files