Prepare release (#28)

* Update dockerfile

* Update cloudbuild.yaml

* Use cloud-lifesciences as our public container registry project

* First round of comments

Dockerfile

@@ -2,31 +2,20 @@
 # the Google Cloud Platform.
 
 # Install pipelines tool.
-FROM golang:1.10
-ENV GOPATH /go
+FROM golang:1.11
 RUN go get github.com/googlegenomics/pipelines-tools/pipelines
 
-
 FROM google/cloud-sdk:alpine
 
 # Copy pipelines tool from the previous step.
-ENV GOPATH /go
-COPY --from=0 /go/ $GOPATH
-ENV PATH $PATH:$GOPATH/bin
+COPY --from=0 /go/bin/pipelines /usr/bin
 
 RUN apk add --update python3 python3-dev build-base && \
     ln -sf python3 /usr/bin/python && \
     pip3 install --upgrade pip enum34 retrying google-api-core google-cloud-storage && \
     mkdir -p /opt/deepvariant_runner/bin && \
     mkdir -p /opt/deepvariant_runner/src
 
-# Kubernetes TPU is in beta.
-RUN gcloud components install beta -q
-
-# Install kubernetes.
-RUN curl -L -o /usr/bin/kubectl https://storage.googleapis.com/kubernetes-release/release/$(curl -s https://storage.googleapis.com/kubernetes-release/release/latest.txt)/bin/linux/amd64/kubectl && \
-    chmod +x /usr/bin/kubectl
-
 ADD LICENSE /
 ADD gcp_deepvariant_runner.py /opt/deepvariant_runner/src/
 ADD gke_cluster.py /opt/deepvariant_runner/src/

cloudbuild-release.yaml

@@ -1,5 +1,5 @@
 substitutions:
-    _PUBLIC_PROJECT_ID: cloud-genomics-pipelines
+    _PUBLIC_PROJECT_ID: cloud-lifesciences
 
 steps:
 - name: 'gcr.io/cloud-builders/docker'

cloudbuild.yaml

@@ -1,5 +1,5 @@
 substitutions:
-    _MODEL: gs://deepvariant/models/DeepVariant/0.7.2/DeepVariant-inception_v3-0.7.2+data-wgs_standard
+    _MODEL: gs://deepvariant/models/DeepVariant/0.8.0/DeepVariant-inception_v3-0.8.0+data-wgs_standard
 
 steps:
 - name: 'gcr.io/cloud-builders/docker'
@@ -30,14 +30,4 @@ steps:
     - '${_MODEL}'
     - 'gpu'
 
-- name: 'gcr.io/${PROJECT_ID}/gcp-deepvariant-runner:${COMMIT_SHA}'
-  id: 'test-image-tpu'
-  args:
-    - 'bash'
-    - '/opt/deepvariant_runner/bin/run_and_verify.sh'
-    - '${PROJECT_ID}'
-    - '${COMMIT_SHA}'
-    - '${_MODEL}'
-    - 'tpu'
-
 timeout: 2h