Update filename for PacBio case-study

PiperOrigin-RevId: 702028030
google · Dec 3, 2024 · b8d744f · b8d744f
1 parent 03f725c
commit b8d744f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/inference_deepvariant.sh b/scripts/inference_deepvariant.sh
@@ -312,7 +312,7 @@ if [[ "${MODEL_PRESET}" = "PACBIO" ]]; then
   BASE="${HOME}/pacbio-case-study"
 
   REF="${REF:=${GCS_DATA_DIR}/case-study-testdata/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna}"
-  BAM="${BAM:=${GCS_DATA_DIR}/pacbio-case-study-testdata/HG003.SPRQ.pacbio.GRCh38.40x.nov2024.bam}"
+  BAM="${BAM:=${GCS_DATA_DIR}/pacbio-case-study-testdata/HG003.SPRQ.pacbio.GRCh38.nov2024.bam}"
   TRUTH_VCF="${TRUTH_VCF:=${GCS_DATA_DIR}/case-study-testdata/HG003_GRCh38_1_22_v4.2.1_benchmark.vcf.gz}"
   TRUTH_BED="${TRUTH_BED:=${GCS_DATA_DIR}/case-study-testdata/HG003_GRCh38_1_22_v4.2.1_benchmark_noinconsistent.bed}"
 elif [[ "${MODEL_PRESET}" = "ONT_R104" ]]; then