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Sparsification of Affine Equality Matrix #1625

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cb0eec6
Created SparseMatrix module
GollokG Nov 5, 2024
5ba152c
Merge pull request #1 from CopperCableIsolator/affeq-sparsification
GollokG Nov 5, 2024
f931125
Merge remote-tracking branch 'upstream/master'
GollokG Nov 5, 2024
69cc72f
changed type to lists
Nov 7, 2024
1b5f531
SparseMatrix list and get_col
GollokG Nov 7, 2024
b1c877a
Implement del_col and del_cols for SparseMatrix
GollokG Nov 8, 2024
bfbd373
added row functions and conversions between vectors and sparse lists
Nov 10, 2024
d0124f9
add_empty_columns untested
CopperCableIsolator Nov 11, 2024
dbc0fdc
merge
CopperCableIsolator Nov 11, 2024
d789459
Implement set_col for SparseMatrix
GollokG Nov 12, 2024
8c23838
Add functions without side effects to ArrayVector and Vector interface
GollokG Nov 12, 2024
fd73a7c
Removed some _with functions from the AffineEqualityDomain
feniup Nov 12, 2024
11e7dcd
sparseVector stumb
CopperCableIsolator Nov 12, 2024
d3b4072
Extracted operations
feniup Nov 14, 2024
7141f97
Implement normalize SparseMatrix
GollokG Nov 14, 2024
7c2cb08
sparseVector stumb
CopperCableIsolator Nov 12, 2024
37d1bc0
Removed some _with functions from the AffineEqualityDomain
feniup Nov 12, 2024
3e159ad
Some Vector Functions
CopperCableIsolator Nov 14, 2024
9acc346
Implement some more SparseMatrix functions
GollokG Nov 15, 2024
128d368
added rref_vec und rref_matrix ohne _with
Nov 18, 2024
89588ab
added new interface functions to sparsematrix
Nov 18, 2024
d3477c0
implemented reduce_col and remove_zero_rows and fixed some bugs
Nov 19, 2024
5a28e34
matrix_normalize_stub
CopperCableIsolator Nov 19, 2024
090b31f
Merge branch 'master' of https://github.com/CopperCableIsolator/gobli…
CopperCableIsolator Nov 19, 2024
daec67b
Merge branch 'master' of https://github.com/CopperCableIsolator/gobli…
Nov 19, 2024
225c730
sexier sub function
CopperCableIsolator Nov 19, 2024
420bde8
toMatrix vec funcs
CopperCableIsolator Nov 19, 2024
4dbc81f
toVector
CopperCableIsolator Nov 19, 2024
af2fc0f
Change of_sparse_list param order and continued normalize function
GollokG Nov 19, 2024
acf5851
Split up vectorMatrix into multiple files; Removed VectorMatrix from …
feniup Nov 20, 2024
32c378d
Merge remote-tracking branch 'origin/master' into file-splitting
feniup Nov 20, 2024
5ce5ee8
Bugfix Matrix.map2i without side effects (different length lists)
GollokG Nov 21, 2024
63506ea
Merge remote-tracking branch 'origin/master' into file-splitting
feniup Nov 21, 2024
7643899
added missing module BatList
feniup Nov 21, 2024
41bb6ed
RenamedFolder; Revealed modules to goblint_lib
feniup Nov 21, 2024
6602d75
Directly revealed modules to goblint_lib
feniup Nov 21, 2024
b7d5c1a
Added missing ArrayVector module to goblint_lib
feniup Nov 21, 2024
b1beb54
Merge pull request #2 from CopperCableIsolator/file-splitting
feniup Nov 21, 2024
8476f95
Vector List
CopperCableIsolator Nov 26, 2024
5fb8041
someMatFuncs
CopperCableIsolator Nov 26, 2024
8c3824f
some functions changed to use vectors
Nov 26, 2024
3234896
again
Nov 26, 2024
fb3442b
Merge branch 'master' of https://github.com/CopperCableIsolator/gobli…
Nov 26, 2024
251f1c9
Reimplemented some matrix functions to vector
GollokG Nov 26, 2024
67c9ef4
Added find_opt and remove_nth to vector interface
GollokG Nov 26, 2024
19ac2db
pushing is_zero_vec
Nov 26, 2024
47f4fa1
Merge branch 'master' of https://github.com/CopperCableIsolator/gobli…
Nov 26, 2024
a0e0f1b
Formatting
GollokG Nov 26, 2024
d768b46
vector functions
Nov 26, 2024
74ce9fe
Merge branch 'master' of https://github.com/CopperCableIsolator/gobli…
Nov 26, 2024
422dd54
Removed some _with functions from the AffineEqualityDomain
feniup Nov 26, 2024
6afcb81
Implement inefficient rref functions
GollokG Nov 26, 2024
e7aa151
Merge branch 'master' into affine-equality-domain-without-with
feniup Nov 26, 2024
7b4173a
ocp-indent on sparseMatrix.ml
feniup Nov 26, 2024
c8db710
del_cols and remove_at_indices
Nov 26, 2024
24fd057
commiting again for indentation
Nov 26, 2024
0e702ee
Merge branch 'master' of https://github.com/CopperCableIsolator/gobli…
Nov 26, 2024
0c9eb46
Vector functions
GollokG Nov 26, 2024
0db8b61
some vector functions
Nov 27, 2024
f413d51
Merge branch 'master' into affine-equality-domain-without-with
GollokG Nov 28, 2024
d439b20
vector conversion to array
Nov 28, 2024
03fab15
Explicit types on normalize
GollokG Nov 28, 2024
f018a06
map2_preserve_zero
CopperCableIsolator Nov 28, 2024
70dbf4d
exists, vector interface
CopperCableIsolator Nov 28, 2024
215b25e
ups
CopperCableIsolator Nov 28, 2024
fd16be1
Merge branch 'master' of https://github.com/CopperCableIsolator/gobli…
Nov 28, 2024
680e56b
Reimplemented normalize in SparseMatrix, some TODOs missing
GollokG Nov 28, 2024
40996b7
Renamed sparseMatrix.ml to match module name
feniup Nov 28, 2024
cb62292
Merge branch 'master' of github.com:CopperCableIsolator/goblint-spars…
feniup Nov 28, 2024
702f258
builds now + reduce_col
Nov 28, 2024
e556c41
Merge branch 'master' of https://github.com/CopperCableIsolator/gobli…
Nov 28, 2024
bec7535
Moved swap, div, sub and normalize to new listMatrix.ml
GollokG Nov 28, 2024
ad34bc7
Renamed tV according to best practices
feniup Nov 28, 2024
bd81ac1
Implement vector findi and minor bugfix in ListMatrix normalize
GollokG Nov 28, 2024
06a32ea
vectorfuncs, foldleftpreservezero
CopperCableIsolator Nov 28, 2024
05a3dc5
Add normalize check for invalid affeq matrix
GollokG Nov 28, 2024
409c01d
Vector function findi_val_opt
GollokG Nov 28, 2024
ad9f618
Adapting normalize and reordering deprecated functions in ListMatrix.ml
GollokG Nov 28, 2024
33b8723
Implement Vector foldleft and apply_with_c
GollokG Nov 28, 2024
785f75d
add column and helper functions
Nov 29, 2024
fe9513a
Fix del_cols duplicate edge case chech before comparing length
GollokG Nov 30, 2024
7a8fab9
Fix set_nth in Vector
GollokG Nov 30, 2024
519ee02
Remove double Mpqf definition
GollokG Dec 1, 2024
d3d998d
Renamed SparseMatrix to ListMatrix in goblint_lib.ml
feniup Dec 3, 2024
b339b78
Merge branch 'master' of github.com:CopperCableIsolator/goblint-spars…
feniup Dec 3, 2024
d68c719
Implement is_covered_by structure, but helper function still missing
GollokG Dec 3, 2024
159d07e
bugfix in insert_at and reduce_col_with_vec
Dec 3, 2024
1f85d28
Implement more vector functions
GollokG Dec 3, 2024
793df4a
Formatting
GollokG Dec 3, 2024
ffa0b54
Merge branch 'master' into affine-equality-domain-without-with
Dec 3, 2024
abdae29
Merge pull request #3 from CopperCableIsolator/affine-equality-domain…
charlotte-brandt Dec 3, 2024
6021c42
Implement is_covered_by
GollokG Dec 3, 2024
97a735b
small bugfixes
Dec 4, 2024
b17f33e
Finish normalize first version with dec2D
GollokG Dec 4, 2024
80672a1
bugfix in find_val_opt and lin_independent
Dec 5, 2024
418de56
Fixed affeq_rows_are_valid helper for normalize
GollokG Dec 5, 2024
e10493a
better map2pz,better naming
CopperCableIsolator Dec 5, 2024
d2b0be7
small hickup
CopperCableIsolator Dec 5, 2024
859ec26
normalize bug fix
Dec 5, 2024
67c1d5c
small naming
CopperCableIsolator Dec 5, 2024
71768be
fold_left2_f_preserves_zero
CopperCableIsolator Dec 5, 2024
0207a73
print for debugging
Dec 5, 2024
2bc4b66
Merge branch 'master' of https://github.com/CopperCableIsolator/gobli…
Dec 5, 2024
ef0cc36
Bugfixes in Vector and more Debug prints
GollokG Dec 5, 2024
c038dc7
Bugfix in Vector keep_vals and to_list; Implement set_nth in Vector"
GollokG Dec 6, 2024
92b784a
Bugfix insert_val_at
GollokG Dec 6, 2024
8ba5777
Bugfix Matrix map2i and Vector insert_val_at again
GollokG Dec 6, 2024
f6a415e
Add more debug-prints
GollokG Dec 6, 2024
3e7d3d6
Bugfix in Vector rev and Matrix map2i again
GollokG Dec 6, 2024
0c95dc7
Bugfix in Matrix del_cols and Vector remove_at_indices
GollokG Dec 6, 2024
c72c77d
arraymatrix passes tests again
Dec 6, 2024
09054a1
Reduced test suite; Simple normalized test with mxn-Matrix with m!=n;
feniup Dec 6, 2024
99cf805
Merge branch 'master' of github.com:CopperCableIsolator/goblint-spars…
feniup Dec 6, 2024
2968963
Added example source
feniup Dec 6, 2024
4ef3acc
more debugging prints and added remove_zero_rows to rref_vec
Dec 7, 2024
968c533
Bugfixes in ListMatrix normalize
GollokG Dec 7, 2024
fe6b2a6
Added a solution vector to the normalize unit test
feniup Dec 9, 2024
18acca5
Normalize test for a shuffeled matrix
feniup Dec 9, 2024
43e042f
Normalize test for row elimination
feniup Dec 9, 2024
ef07123
Normalize tests with different domains
feniup Dec 9, 2024
8d1c548
Normalize tests for idempotency and negation
feniup Dec 9, 2024
d71d7bd
bugfix in add_empty_columns, behavious still differs from arraymatrix
Dec 10, 2024
db97f30
add_emtpy_cols uses arraymatrix logic here + bugfix in normalize - on…
Dec 10, 2024
315dac6
appending and normalizing in is_covered_by - all tests pass
Dec 10, 2024
58e34c0
Normalize tests for empty matrix, two column matrix and a normalized …
feniup Dec 10, 2024
9f7cec9
Added a newline
feniup Dec 10, 2024
6673aae
Changed the assert failure text for when the normalization fails
feniup Dec 10, 2024
fe984fb
Add some is_covered_by tests
GollokG Dec 10, 2024
f44f2eb
Formatting
GollokG Dec 10, 2024
79f890a
Added some comments on the test setup
feniup Dec 10, 2024
4b34fda
Added some comments on the test setup
feniup Dec 10, 2024
586cc38
Merge branch 'master' of https://github.com/CopperCableIsolator/gobli…
GollokG Dec 10, 2024
1241795
bugfix in insert_zeros and use list funtionality again, uses apron st…
Dec 10, 2024
091b9fa
coveredddd
CopperCableIsolator Dec 10, 2024
a7a4e14
Fix normalize tests for floating point and fraction
GollokG Dec 12, 2024
b15b9d2
small tweak in findi_val_opt, could be even a tini tiny bit faster bu…
CopperCableIsolator Dec 12, 2024
0f6509b
removed prints for benchmarking
Dec 12, 2024
9ea8cc2
Remove old copies in AffineEqualityDomain
GollokG Dec 12, 2024
ca91d48
Adapt sparseVector functions to tail recursive
GollokG Dec 12, 2024
6883084
added Timingwraps to vector functions and alternative to findivalopt
Dec 13, 2024
61caba2
implemented different rref_vec that doesn't use normalize
Dec 13, 2024
c9be718
new rref_vec should be faster
Dec 13, 2024
fb1f36a
removed files with debug logs that I pushed by accident
Dec 13, 2024
0535677
Add apply_with_c_f_preserves_zero
GollokG Dec 13, 2024
c776a2b
Changed some calls in Domain to zero preserving
GollokG Dec 13, 2024
d3b18aa
Change rref_matrix without append and normalize, still have to benchmark
GollokG Dec 14, 2024
eba9d49
Remove some warnings of deprecated code
GollokG Dec 14, 2024
21a839c
Merge branch 'master' into benchmarks
GollokG Dec 15, 2024
dd0000e
Merge branch 'benchmarks' into master
GollokG Dec 17, 2024
2e80b94
removed second remove_nth
charlotte-brandt Dec 17, 2024
1fa998f
Remove deprecated _with functions from Vector and Matrix interface
GollokG Dec 17, 2024
1ea8040
Remove deprecated _with functions from Vector and Matrix interface
GollokG Dec 17, 2024
fd5689a
commenting some functions
charlotte-brandt Dec 17, 2024
335d4ea
Merge branch 'master' of https://github.com/CopperCableIsolator/gobli…
charlotte-brandt Dec 17, 2024
6186435
is_cons_vec
CopperCableIsolator Dec 17, 2024
d42bf5f
replace the last findi_val_opt
charlotte-brandt Dec 17, 2024
0088812
ein paar maps ausgetauscht
CopperCableIsolator Dec 17, 2024
92802e5
Optimize non zero-preserving Vector.map and Vector.map2i
GollokG Dec 18, 2024
2c8901f
added test from lin2vareq to affeq that found mistake in dim_add
charlotte-brandt Dec 19, 2024
4411280
Implement zero preserving Array Vector functions by calling normal fu…
GollokG Dec 19, 2024
012104f
assert_rref
CopperCableIsolator Dec 19, 2024
37190f4
assert_rref
CopperCableIsolator Dec 19, 2024
d7da9c7
small bugfix assert_rref
CopperCableIsolator Dec 19, 2024
bb15181
Bugfix rref_vec using reduce_col_with_vec
GollokG Dec 19, 2024
0678f66
Change order of functions because of compilation error
GollokG Dec 19, 2024
3b49ba5
Organize Vector and Matrix interface
GollokG Dec 21, 2024
93463f2
Bugfix Vector is_const_vec
GollokG Dec 21, 2024
6ae9bf1
Remove prints in ArrayMatrix
GollokG Dec 21, 2024
b8ba2bb
reordered function in vector so that they match the interface
charlotte-brandt Dec 21, 2024
60f7b67
Reorder listMatrix; Some renaming
GollokG Dec 23, 2024
8c931a7
Optimize get_col for sparse; Some timing_wraps for matrix
GollokG Dec 23, 2024
de6acc7
Fix semantics Matrix.map2, changed Matrix.map2i but might still have …
GollokG Dec 23, 2024
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2,318 changes: 2,318 additions & 0 deletions list.txt

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2 changes: 1 addition & 1 deletion regtest.sh
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ if [[ $OSTYPE == 'darwin'* ]]; then
grep="ggrep"
fi
params="`$grep -oP "PARAM: \K.*" $file`"
cmd="./goblint --enable warn.debug --enable dbg.regression --html $params ${@:3} $file" # -v
cmd="./goblint --enable warn.debug --enable dbg.regression $params ${@:3} $file -v" # -v --html
echo "$cmd"
eval $cmd
echo "See result/index.xml"
9 changes: 8 additions & 1 deletion src/analyses/apron/affineEqualityAnalysis.apron.ml
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,18 @@

open Analyses

open ArrayVector
open ArrayMatrix

open SparseVector
open ListMatrix

include RelationAnalysis

let spec_module: (module MCPSpec) Lazy.t =
lazy (
let module AD = AffineEqualityDomain.D2 (VectorMatrix.ArrayVector) (VectorMatrix.ArrayMatrix) in
let module AD = AffineEqualityDomain.D2 (SparseVector) (ListMatrix) in
let module AD_A = AffineEqualityDomain.D2 (ArrayVector) (ArrayMatrix) in (* TODO: Remove this! Just to suppress warning *)
let module Priv = (val RelationPriv.get_priv ()) in
let module Spec =
struct
Expand Down
11 changes: 11 additions & 0 deletions src/cdomains/affineEquality/abstractMatrix.ml
Original file line number Diff line number Diff line change
@@ -0,0 +1,11 @@
open RatOps
open AbstractVector
open Matrix

(** Some functions inside have the suffix _with, which means that the function has side effects. *)
module type AbstractMatrix =
functor (A: RatOps) (V: AbstractVector) ->
sig
include Matrix with type vec := V(A).t and type num := A.t
end

10 changes: 10 additions & 0 deletions src/cdomains/affineEquality/abstractVector.ml
Original file line number Diff line number Diff line change
@@ -0,0 +1,10 @@
open RatOps
open Vector

(** Some functions inside have the suffix _with, which means that the function has side effects. *)
module type AbstractVector =
functor (A: RatOps) ->
sig
include Vector with type num:= A.t
end

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