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  1. rnaseqc rnaseqc Public

    Fast, efficient RNA-Seq metrics for quality control and process optimization

    C++ 164 19

  2. SignatureAnalyzer SignatureAnalyzer Public

    Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.

    Python 80 22

  3. deTiN deTiN Public

    DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

    Jupyter Notebook 50 22

  4. MutSig2CV MutSig2CV Public

    MutSig2CV from Lawrence et al. 2014

    MATLAB 31 9

  5. dalmatian dalmatian Public

    dalmatian is a collection of high-level companion functions for Firecloud and FISS.

    Python 19 13

  6. CPTAC_PanCan_PTM_2023 CPTAC_PanCan_PTM_2023 Public

    Jupyter Notebook 17 1

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