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Please see [last year's syllabus](http://cbb752b23.gersteinlab.org/syllabus) (with slide packs at the bottom) for previews for this year’s lectures, which will be slightly different. For this year, an updated slide pack will be posted after the lecture. (If it is substantially different from '22, an updated video will also be posted.) Video recordings for this year's lectures can be found in the Media Library tab in Canvas.

| Date | Topic | This year’s lecture | [Last year’s lecture](http://cbb752b23.gersteinlab.org/syllabus) | Comment |
| ---- | ---------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------ | ---------------------------------------------------------------- | -------------------------------------------------------------------------------------- |
| 1/20 | \*YALE\* Spring term classes begin, 8.20 a.m. | | | |
| | | | |
| 1/20 | Introduction | 23i1 | <span style="color:silver">22i1</span> | |
| 1/22 | DATA 1 - Genomics I | 23d1 | <span style="color:silver">22d1</span> | |
| 1/27 | DATA 2 - Genomics II | 23d2 | <span style="color:silver">22d2</span> | |
| 1/29 | DATA 3 - Proteomics I | 23d3 | <span style="color:silver">22d3</span> | |
| 2/3 | DATA 4 - Proteomics II | 23d4 | <span style="color:silver">22d4</span> | |
| 2/5 | MINING 1 - Personal Genomes + Seq. Comparison + Multi-seq Alignment | 23i2a, 23m3, 23m4 | <span style="color:silver">22i2a, 22m3, 22m4</span> | |
| 2/10 | MINING 2 - Fast Alignment + Variant Calling (incl. a focused section on SVs) | 23m5,23m6a | <span style="color:silver">22m5,22m6a,22m6b</span> | |
| 2/12 | MINING 3 - Basic Multi-Omics Supervised Mining #1 | 23m6b,23m7,23m8a | <span style="color:silver">22m6b,22m7,22m8a</span> | |
| 2/17 | MINING 4 - Supervised Mining #2 + Unsupervised Mining #1 | 23m8b,23m8c,23m9a,23m9c | <span style="color:silver">22m8a,22m8b,22m8c,22m9a</span> | |
| 2/19 | DATA 5 - Knowledge Representation & Databases | 23d5 | <span style="color:silver">22d5</span> | |
| 2/24 | MINING 5 - Unsupervised Mining #2 + Single-Cell Analysis | 23m9d, 23m9e | <span style="color:silver">22m9d</span> | |
| 2/26 | Quiz on 1st Half | [quiz 1 study guide](http://files2.gersteinlab.org/public-docs/2023/02.22/cbb752-spr23-quiz1-studyguide.pdf) | | [quiz 1 answer key](http://files2.gersteinlab.org/public-docs/2023/05.09/quiz1key.pdf) |
| 3/3 | TOPICS 1 - Single-Cell Analysis (continues) + Privacy | 23t1, 23t2 | <span style="color:silver">22t2</span> | |
| 3/5 | TOPICS 2 - Network Analysis | 23m10a, 23m10b, 23m10c, 23m10d, 23m10e | <span style="color:silver">22m10a,22m10b,22m10c,M10d</span> | |
| 3/10 | TOPICS 3 - Personal Genomes (from an individual's perspective) | 23i2b | <span style="color:silver">22i2b</span> | |
| | | | | |
| | | | | |
| 3/14 | Spring break begins | | | |
| | | | |
| 3/24 | TOPICS 4 - Deep Learning Fundamentals | 23m12a | <span style="color:silver">22m12a</span> | |
| 3/26 | TOPICS 5 - Deep Learning Fundamentals (continues) | 23m12b | <span style="color:silver">22m12b</span> | |
| 3/31 | TOPICS 6 - Deep Learning for Biology + Biosensor Data Analysis | 22t3, 22t4 | | |
| 4/2 | MODELING 1 - Protein Simulation I | 23s1 | <span style="color:silver">22s1</span> | |
| 4/7 | MODELING 2 - Protein Simulation II | 23s2 | <span style="color:silver">22s1, 22s2</span> | |
| 4/9 | MODELING 3 - Protein Simulation III | 23s3 | <span style="color:silver">22s2, 22s3</span> | |
| 4/14 | MODELING 4 - Protein Simulation IV | 23s4 | <span style="color:silver">22s4</span> | |
| 4/16 | MODELING 5 - Protein Simulation V | | 22s5 | |
| 4/21 | Quiz on 2nd Half | [quiz 2 study guide](http://files2.gersteinlab.org/public-docs/2023/04.18/Quiz2StudyGuide.pdf) | | [quiz 2 answer key](http://files2.gersteinlab.org/public-docs/2023/05.09/quiz2key.pdf) |
| 4/23 | Final Presentations | | | |
| 4/28 | \*YALE\* Classes end; Reading period begins | | | |
| 4/30 | \*YALE\* Final examinations begin | | | |
| 5/15 | \*YALE\* Final examinations end | | |
| Date | Topic | This year’s lecture | [Last year’s lecture](http://cbb752b23.gersteinlab.org/syllabus) | Comment |
| ---- | ---------------------------------------------------------------------------- | ------------------- | ---------------------------------------------------------------- | ------- |
| 1/20 | \*YALE\* Spring term classes begin, 8.20 a.m. | | | |
| | | | |
| 1/20 | Introduction | | 23i1 | |
| 1/22 | DATA 1 - Genomics I | | 23d1 | |
| 1/27 | DATA 2 - Genomics II | | 23d2 | |
| 1/29 | DATA 3 - Proteomics I | | 23d3 | |
| 2/3 | DATA 4 - Proteomics II | | 23d4 | |
| 2/5 | MINING 1 - Personal Genomes + Seq. Comparison + Multi-seq Alignment | | 23i2a, 23m3, 23m4 | |
| 2/10 | MINING 2 - Fast Alignment + Variant Calling (incl. a focused section on SVs) | | 23m5,23m6a | |
| 2/12 | MINING 3 - Basic Multi-Omics Supervised Mining #1 | | 23m6b,23m7,23m8a | |
| 2/17 | MINING 4 - Supervised Mining #2 + Unsupervised Mining #1 | | 23m8b,23m8c,23m9a,23m9c | |
| 2/19 | DATA 5 - Knowledge Representation & Databases | | 23d5 | |
| 2/24 | MINING 5 - Unsupervised Mining #2 + Single-Cell Analysis | | 23m9d, 23m9e | |
| 2/26 | Quiz on 1st Half | | | |
| 3/3 | TOPICS 1 - Single-Cell Analysis (continues) + Privacy | | 23t1, 23t2 | |
| 3/5 | TOPICS 2 - Network Analysis | | 23m10a, 23m10b, 23m10c, 23m10d, 23m10e | |
| 3/10 | TOPICS 3 - Personal Genomes (from an individual's perspective) | | 23i2b | |
| | | | | |
| | | | | |
| 3/14 | Spring break begins | | | |
| | | | |
| 3/24 | TOPICS 4 - Deep Learning Fundamentals | | 23m12a | |
| 3/26 | TOPICS 5 - Deep Learning Fundamentals (continues) | | 23m12b | |
| 3/31 | TOPICS 6 - Deep Learning for Biology + Biosensor Data Analysis | | 22t3, 22t4 | |
| 4/2 | MODELING 1 - Protein Simulation I | | 23s1 | |
| 4/7 | MODELING 2 - Protein Simulation II | | 23s2 | |
| 4/9 | MODELING 3 - Protein Simulation III | | 23s3 | |
| 4/14 | MODELING 4 - Protein Simulation IV | | 23s4 | |
| 4/16 | MODELING 5 - Protein Simulation V | | | |
| 4/21 | Quiz on 2nd Half | | | |
| 4/23 | Final Presentations | | | |
| 4/28 | \*YALE\* Classes end; Reading period begins | | | |
| 4/30 | \*YALE\* Final examinations begin | | | |
| 5/15 | \*YALE\* Final examinations end | | |

### Lecture Slide Pack

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