GVES

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GVES: Gene Vector for Each Sample

Data formats

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gene expression(example_expression.pkl) : a DataFrame file n+1 rows(index) and s columns. n is the number of genes and s is the number of samples. The additional row at first is the 0/1 binary prognosis labels.

	sample_1	sample_2	sample_3	sample_4 ... sample_s
OSEVENT     0              1                1              0     ...    0
gene_1
gene_2
gene_3
gene_4
'''
gene_n

gene network(example_network.txt) : a text file with the number of edges. It consists of two genes per row.

Run GVES

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In the terminal,

    python GVES.py "example_expression.pkl" "example_network.txt" "Result_folder"

where Result_folder is the path where the results will be saved.