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Malformatted distance #1

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mbhall88 opened this issue Jul 3, 2024 · 0 comments
Open

Malformatted distance #1

mbhall88 opened this issue Jul 3, 2024 · 0 comments

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@mbhall88
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mbhall88 commented Jul 3, 2024

When I run ccphylo I get the following error

$ ccphylo tree -i 200.dist.phylip -o 200.tree -t 8
Malformatted distance at pos:   (1,0)
"ERR229918  114  1193  0  1182  127  93  85  87  86  1170  109  1155  1185  51  91  1182  1208  111  125  1195  1187  76  106  1175  1192  1196  1199  164  87  96  1179  125  1165  1173  117
5  127  1179  86  1170  1165  92  94  89  119  112  85  1188  105  122  116  112  1179  1199  81  127  89  95  1171  1166  128  1194  93  1150  1185  1163  958  1187  1185  1172  126  89  13
5  94  86  134  1164  1197  1165  1161  1079  1170  1234  1913  1183  1182  1197  1930  1162  1174  1157  1179  1188  1212  1169  1196  1183  1173  1180  1165  1193  1939  1919  1201  1210
1924  1216  1166  1173  1170  1199  1186  1165  172  343  144  343  214  144  160  197  213  164  517  160  337  1205  388  159  189  1211  187  184  343  331  302  170  302  1171  176  174
 168  171  196  523  305  151  355  187  1173  133  343  146  174  173  156  141  371  208  165  197  294  178  318  149  522  303  140  197  149  165  304  298  177  335  381  202  142  203
  186  185  194  151  141  184  387  311  189  340  201  269  229  348  253  261  259  238  224  236  230  210"

The first couple of line of my phylip look like this

    200
ERR229915  0  1265  114  1254  215  161  155  157  156  1242  151  1225  1257  133  159  1252  1280  155  208  1267  1259  134  152  1247  1264  1268  1271  244  153  162  1249  207  1237  1241  1247  205  1249  148  1244  1237  158  154  159  201  156  155  1260  29  202  164  34  1251  1269  141  209  149  155  1243  1238  204  1264  161  1222  1257  1235  1026  1259  1255  1244  162  155  219  156  156  214  1236  1271  1235  1231  1153  1244  1308  1985  1255  1252  1269  2002  1234  1248  1231  1249  1262  1276  1243  1268  1253  1247  1252  1237  1267  2011  1989  1275  1274  1996  1286  1238  1242  1239  1273  1260  1233  254  425  226  423  290  226  242  275  295  248  595  242  421  1269  464  245  271  1277  271  269  419  411  380  254  384  1241  256  258  252  257  280  605  387  233  435  269  1241  213  421  226  254  251  235  227  449  290  249  281  375  258  399  230  602  382  220  279  233  251  385  380  265  413  459  288  228  285  266  271  276  232  219  264  465  392  273  420  284  343  305  422  329  335  331  314  300  312  306  288
ERR229917  1265  0  1193  855  1260  1268  1272  1276  1273  849  1276  56  90  1192  1276  863  111  1276  1263  756  863  1249  1271  848  753  99  104  1265  1270  1277  732  1269  838  854  854  1259  732  1263  849  838  1277  1271  1272  1259  1271  1270  755  1260  1266  1269  1267  858  96  1254  1269  1262  1266  850  843  1256  371  1278  831  866  836  643  94  746  737  1283  1230  1279  1273  1273  1270  1292  1334  1298  1296  1216  1298  1371  1924  1310  1313  1328  1929  1295  1307  1292  1312  1325  769  1306  1335  1316  1303  857  1302  1326  1944  1922  1338  765  1935  783  1301  1310  1301  1334  1321  1300  1275  1238  1270  1236  1291  1274  1281  1286  1296  1271  1223  1275  1240  767  1222  1278  1280  761  1284  1277  1236  1230  1249  1265  1237  846  1273  1271  1275  1272  1295  1232  1238  1281  1230  1282  856  1272  1244  1284  1261  1270  1285  1277  1218  1295  1284  1294  1269  1277  1249  1294  1229  1274  1268  1278  1272  1268  1267  1245  1311  1238  1223  1306  1276  1302  1281  1317  1287  1288  1272  1274  1225  1252  1288  1229  1286  1286  1304  1215  1276  1294  1292  1275  1293  1293  1279  1277

I'm not super familiar with phylip so am struggling to determine if/what the issue is with this file?

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