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@genomicepidemiology

Center for Genomic Epidemiology

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  1. ARGprofiler ARGprofiler Public

    A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets

    HTML 25 4

  2. plasmidfinder plasmidfinder Public

    Python 7 3

  3. SpanSeq SpanSeq Public

    Python 7

  4. kma kma Public

    C 5 1

  5. resfinder resfinder Public

    Python 4 1

  6. flankophile flankophile Public

    Python 3

Repositories

Showing 10 of 46 repositories
  • ARGprofiler Public

    A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets

    genomicepidemiology/ARGprofiler’s past year of commit activity
    HTML 25 Apache-2.0 4 2 0 Updated Jan 16, 2025
  • gs3_acquired_vs_FG Public
    genomicepidemiology/gs3_acquired_vs_FG’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Jan 15, 2025
  • kma Public
    genomicepidemiology/kma’s past year of commit activity
    C 5 1 2 1 Updated Nov 27, 2024
  • SpanSeq Public
    genomicepidemiology/SpanSeq’s past year of commit activity
    Python 7 BSD-3-Clause 0 0 0 Updated Nov 20, 2024
  • amrlmclustering Public
    genomicepidemiology/amrlmclustering’s past year of commit activity
    0 0 0 0 Updated Sep 13, 2024
  • CGPhylo Public

    Core Genome Phylogenetics Tool

    genomicepidemiology/CGPhylo’s past year of commit activity
    Python 1 0 0 0 Updated Sep 12, 2024
  • KMADBInspector Public

    Tool for inspecting a KMA database and fetching stats related to homology of an input sample.

    genomicepidemiology/KMADBInspector’s past year of commit activity
    Python 0 0 0 0 Updated Aug 14, 2024
  • NanoMGT Public

    NanoMarkerGeneTyper

    genomicepidemiology/NanoMGT’s past year of commit activity
    Python 0 0 0 0 Updated Jul 10, 2024
  • ccphylo Public
    genomicepidemiology/ccphylo’s past year of commit activity
    C 2 0 1 0 Updated Jun 27, 2024
  • probmap Public

    Probabilistic mapper

    genomicepidemiology/probmap’s past year of commit activity
    Rust 0 0 0 0 Updated Jun 6, 2024
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