🐳 initial commit

genomicare · Apr 3, 2021 · f9fdef9 · f9fdef9
commit f9fdef9
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diff --git a/Dockerfile b/Dockerfile
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+FROM ubuntu:18.04
+COPY gdc-client .
+COPY dl_conf.dtt .
+COPY gdc_manifest_tissue.txt .
+COPY manifest_tissue.txt .
diff --git a/build.sh b/build.sh
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+docker build -t gdc_download .
+
diff --git a/dl_conf.dtt b/dl_conf.dtt
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+[download]
+dir = /GCI/tcga_slides
+n_processes = 6
diff --git a/gdc-client b/gdc-client
diff --git a/run.sh b/run.sh
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+docker run -it --rm -v /GCI:/GCI --name gdc_download gdc_download ./gdc-client download -m manifest_tissue.txt --config dl_conf.dtt
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		docker run -it --rm -v /GCI:/GCI --name gdc_download gdc_download ./gdc-client download -m manifest_tissue.txt --config dl_conf.dtt