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Citing KinFin

Laetsch DR and Blaxter ML, 2017. KinFin: Software for Taxon-Aware Analysis of Clustered Protein Sequences. G3: Genes, Genomes, Genetics. Doi:10.1534/g3.117.300233

Dependencies

  • UNIX system

Installation

  • Create Conda environment
$ conda create -n kinfin -c conda-forge docopt==0.6.2 scipy==0.19.0 matplotlib networkx==1.11 ete3
$ conda activate kinfin
  • Clone github repo
$ git clone https://github.com/DRL/kinfin.git
  • Run install script for fetching databases
$ cd kinfin
$ ./install
  • Test kinfin
$ ./test

Usage

$ ./kinfin -h

Documentation

kinfin.readme.io

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Taxon-aware analysis of clustered protein sequences

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  • Python 98.4%
  • Shell 1.6%