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Test new defaults and descriptions for status
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sources/test_taxondir/ATTR_seq_status_project.types.yaml
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| defaults: | ||
| attributes: | ||
| display_group: sequencing_status | ||
| display_level: 2 | ||
| summary: enum | ||
| traverse: enum | ||
| traverse_direction: up | ||
| type: keyword | ||
| constraint: | ||
| enum: | ||
| - published | ||
| - insdc_open | ||
| - open | ||
| # - insdc_submitted | ||
| - in_assembly | ||
| - data_generation | ||
| - in_progress | ||
| - sample_acquired | ||
| - sample_collected | ||
| - sample_available | ||
| value_metadata: | ||
| default: | ||
| sample_available: | ||
| description: "Project has available samples for the taxon" | ||
| sample_collected: | ||
| description: "Project has collected samples for the taxon" | ||
| sample_acquired: | ||
| description: Samples received by sequencing center | ||
| in_progress: | ||
| description: Sequencing started but assembly not yet publicly available | ||
| data_generation: | ||
| description: Lab work in progress | ||
| in_assembly: | ||
| description: In assemvly | ||
| insdc_submitted: | ||
| description: Assembly submitted to INSDC but not yet publicly available | ||
| open: | ||
| description: Data publicly available | ||
| insdc_open: | ||
| description: Data publicly available on INSDC sequence repositories | ||
| published: | ||
| description: Publication describing assembly is available | ||
| attributes: | ||
| sequencing_status: | ||
| description: Most advanced sequencing status for taxon across all projects | ||
| display_name: Sequencing status | ||
| sequencing_status_africabp: | ||
| description: Sequencing status for Africa Biogenome Project | ||
| display_name: Sequencing status AfricaBP | ||
| sequencing_status_ag100pest: | ||
| description: Sequencing status for Ag100Pest Initiative | ||
| display_name: Sequencing status Ag100Pest | ||
| sequencing_status_agi: | ||
| description: Sequencing status for AGI Initiative from Bioplatforms Australia | ||
| display_name: Sequencing status AGI | ||
| sequencing_status_arg: | ||
| description: Sequencing status for Australian Amphibian and Reptile Genomics Initiative Collaboration - AusARG | ||
| display_name: Sequencing status AusARG | ||
| sequencing_status_asg: | ||
| description: Sequencing status for Aquatic Symbiosis Genomics Project | ||
| display_name: Sequencing status ASG | ||
| sequencing_status_b10k: | ||
| description: Sequencing status for Bird 10,000 Genomes Project | ||
| display_name: Sequencing status B10K | ||
| sequencing_status_bat1k: | ||
| description: Sequencing status for 1,000 Bat Genomes Project | ||
| display_name: Sequencing status Bat1K | ||
| sequencing_status_canbp: | ||
| description: Sequencing status for Canada Biogenome Project | ||
| display_name: Sequencing status CanBP - CBP | ||
| sequencing_status_cbp: | ||
| description: Sequencing status for Catalan Biogenome Project | ||
| display_name: Sequencing status CBP | ||
| sequencing_status_ccgp: | ||
| description: Sequencing status for California Conservation Genomics Project | ||
| display_name: Sequencing status CCGP | ||
| sequencing_status_cfgp: | ||
| description: Sequencing status for Cartilaginous Fish Genome Project | ||
| display_name: Sequencing status CFGP | ||
| sequencing_status_dtol: | ||
| description: Sequencing status for Darwin Tree of Life project | ||
| display_name: Sequencing status DToL | ||
| # sequencing_status_ebp: | ||
| # description: Sequencing status for EBP | ||
| # display_name: Sequencing status EBP | ||
| sequencing_status_ebpn: | ||
| description: Sequencing status for Earth Biogenome Project Norway EBP-Nor | ||
| display_name: Sequencing status EBPN - EBP-Nor | ||
| sequencing_status_endemixit: | ||
| description: Sequencing status for Italian Endemics Project | ||
| display_name: Sequencing status ENDEMIXIT | ||
| # sequencing_status_erga: | ||
| # description: Sequencing status for ERGA | ||
| # display_name: Sequencing status ERGA | ||
| sequencing_status_erga-bge: | ||
| description: Sequencing status for ERGA-BGE Project | ||
| display_name: Sequencing status ERGA-BGE | ||
| sequencing_status_erga-ch: | ||
| description: Sequencing status for ERGA Switzerland Project | ||
| display_name: Sequencing status ERGA-CH | ||
| sequencing_status_erga-pil: | ||
| description: Sequencing status for ERGA Pilot Project | ||
| display_name: Sequencing status ERGA-PIL | ||
| sequencing_status_eurofish: | ||
| description: Sequencing status for EUROFISH Project | ||
| display_name: Sequencing status EUROFISH | ||
| sequencing_status_gaga: | ||
| description: Sequencing status for Global Ant Genomics Alliance Project | ||
| display_name: Sequencing status GAGA | ||
| sequencing_status_gap: | ||
| description: Sequencing status for Genomics for Australian Plants Project | ||
| display_name: Sequencing status GAP | ||
| sequencing_status_gbr: | ||
| description: Sequencing status for Great Reef Barrier Project | ||
| display_name: Sequencing status GBR | ||
| sequencing_status_giga: | ||
| description: Sequencing status for Global Invertebrate Genome Alliance Project | ||
| display_name: Sequencing status GIGA | ||
| sequencing_status_i5k: | ||
| description: Sequencing status for 5,000 Insect Genomes Project | ||
| display_name: Sequencing status i5K | ||
| sequencing_status_ilebp: | ||
| description: Sequencing status for Illinois EBP Pilot Project | ||
| display_name: Sequencing status IlEBP | ||
| sequencing_status_1kfg: | ||
| description: Sequencing status for 1,000 Fungal Genomes Project | ||
| display_name: Sequencing status 1KFG | ||
| sequencing_status_lmgp: | ||
| description: Sequencing status for Lilioid Monocots Core Group Genome Project | ||
| display_name: Sequencing status LMGP | ||
| sequencing_status_loewe-tbg: | ||
| description: Sequencing status for LOEWE Centre for Translational Biodiversity Genomics Projects | ||
| display_name: Sequencing status LOEWE-TBG | ||
| sequencing_status_metainvert: | ||
| description: Sequencing status for Soil Invertebrate Genome Initiative | ||
| display_name: Sequencing status METAINVERT | ||
| sequencing_status_ogg: | ||
| description: Sequencing status for Open Green Genomes Project | ||
| display_name: Sequencing status OGG | ||
| sequencing_status_omg: | ||
| description: Sequencing status for Oz Mammals Genomics Project | ||
| display_name: Sequencing status OMG | ||
| sequencing_status_other: | ||
| description: Sequencing status for temporarily unafiliated Projects | ||
| display_name: Sequencing status OTHER | ||
| sequencing_status_pgp: | ||
| description: Sequencing status for Polar Genomes Project | ||
| display_name: Sequencing status PGP | ||
| sequencing_status_phyloalps: | ||
| description: Sequencing status for PhyloAlps Project | ||
| display_name: Sequencing status PhyloAlps | ||
| sequencing_status_prgp: | ||
| description: Sequencing status for Primate Genomes Project | ||
| display_name: Sequencing status PRGP | ||
| sequencing_status_psyche: | ||
| description: Sequencing status for Project Psyche | ||
| display_name: Sequencing status Psyche | ||
| sequencing_status_squalomix: | ||
| description: Sequencing status for Squalomix Project | ||
| display_name: Sequencing status Squalomix | ||
| sequencing_status_tsi: | ||
| description: Sequencing status for Threatened Species Initiative | ||
| display_name: Sequencing status TSI | ||
| sequencing_status_vgp: | ||
| description: Sequencing status for Vertebrate Genomes Project | ||
| display_name: Sequencing status VGP | ||
| display_group: sequencing_status | ||
| sequencing_status_ygg: | ||
| description: Sequencing status for Yggdrasil Project | ||
| display_name: Sequencing status YGG | ||
| sequencing_status_zoonomia: | ||
| description: Sequencing status for Zoonomia Project | ||
| display_name: Sequencing status Zoonomia | ||
|
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