No commit message

genomehubs · Jul 25, 2024 · 047a3ba · 047a3ba
2 parents 9af1afe + 439aeb8
commit 047a3ba
Show file tree

Hide file tree

Showing 32 changed files with 32 additions and 32 deletions.
diff --git a/sources/assembly-data-sample/ncbi_datasets_eukaryota_sample.types.yaml b/sources/assembly-data-sample/ncbi_datasets_eukaryota_sample.types.yaml
@@ -95,7 +95,7 @@ file:
   organelle: nucleus
   source: INSDC
   source_url_stub: https://www.ncbi.nlm.nih.gov/assembly/
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
 identifiers:
   assembly_id:
     header: genbankAssmAccession

diff --git a/sources/assembly-data-sample/ncbi_datasets_sample.types.yaml b/sources/assembly-data-sample/ncbi_datasets_sample.types.yaml
@@ -60,7 +60,7 @@ file:
     - TAXON_assembly.types.yaml
   source: INSDC
   source_url_stub: https://www.ncbi.nlm.nih.gov/assembly/
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
 identifiers:
   sample_id:
     header: biosampleAccession

diff --git a/sources/assembly-data-taxon/cngb_taxon.types.yaml b/sources/assembly-data-taxon/cngb_taxon.types.yaml
@@ -18,7 +18,7 @@ file:
   header: true
   name: cngb.tsv
   organelle: nucleus
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
 identifiers:
   assembly_id:
     constraint:

diff --git a/sources/assembly-data-taxon/ncbi_datasets_eukaryota_taxon.types.yaml b/sources/assembly-data-taxon/ncbi_datasets_eukaryota_taxon.types.yaml
@@ -203,7 +203,7 @@ file:
   organelle: nucleus
   source: INSDC
   source_url_stub: https://www.ncbi.nlm.nih.gov/assembly/
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
 identifiers:
   assembly_id:
     constraint:

diff --git a/sources/assembly-data/cngb.types.yaml b/sources/assembly-data/cngb.types.yaml
@@ -17,7 +17,7 @@ file:
   organelle: nucleus
   source: CNGB
   source_url_stub: https://db.cngb.org/search/assembly/
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
 taxonomy:
   taxon:
     header: organismName

diff --git a/sources/assembly-data/ncbi_datasets_eukaryota.types.yaml b/sources/assembly-data/ncbi_datasets_eukaryota.types.yaml
@@ -153,7 +153,7 @@ file:
     - TAXON_assembly.types.yaml
   source: INSDC
   source_url_stub: https://www.ncbi.nlm.nih.gov/assembly/
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
 identifiers:
   assembly_id:
     header: genbankAccession

diff --git a/sources/assembly-data/refseq_organelles.types.yaml b/sources/assembly-data/refseq_organelles.types.yaml
@@ -39,7 +39,7 @@ file:
     - ATTR_assembly.types.yaml
   source: NCBI
   source_url_stub: https://www.ncbi.nlm.nih.gov/nuccore/
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
 identifiers:
   assembly_id:
     header: refseqAccession

diff --git a/sources/assembly-data/ucsc_ids.types.yaml b/sources/assembly-data/ucsc_ids.types.yaml
@@ -3,7 +3,7 @@ file:
   format: tsv
   header: false
   name: UCSC_GI.assemblyHubList.tsv.gz
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
 identifiers:
   assembly_id:
     index: 0

diff --git a/sources/btk/btk.types.yaml b/sources/btk/btk.types.yaml
@@ -21,7 +21,7 @@ file:
     - ATTR_assembly.types.yaml
     - ATTR_btk.types.yaml
     - TAXON_assembly.types.yaml
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
 identifiers:
   assembly_alias:
     header: alias

diff --git a/sources/genomesize-karyotype/FILE_DTOL_Plant_Genome_Size_Estimates.types.yaml b/sources/genomesize-karyotype/FILE_DTOL_Plant_Genome_Size_Estimates.types.yaml
@@ -3,7 +3,7 @@ file:
   header: true
   name: DTOL_Plant_Genome_Size_Estimates.tsv
   source: DTOL Plant Genome Estimates Kew
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
 attributes:
   genome_size:
     type: long

diff --git a/sources/genomesize-karyotype/FILE_DTOL_assembly_informatics_status_kmer_draft.types.yaml b/sources/genomesize-karyotype/FILE_DTOL_assembly_informatics_status_kmer_draft.types.yaml
@@ -3,7 +3,7 @@ file:
   header: true
   name: DTOL_assembly_informatics_status_kmer_draft.tsv
   source: Darwin Tree of Life Assembly Team
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
   source_url: https://qc.tol.sanger.ac.uk/
 attributes:
   genome_size_kmer:

diff --git a/sources/sra/sra.types.yaml b/sources/sra/sra.types.yaml
@@ -24,7 +24,7 @@ file:
   name: sra.tsv
   needs:
     - ATTR_sra.types.yaml
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
 taxonomy:
   taxon_id:
     header: taxon_id
diff --git a/sources/status-lists/FILE_ATLASEA.types.yaml b/sources/status-lists/FILE_ATLASEA.types.yaml
@@ -4,7 +4,7 @@ file:
   comment: "#"
   name: ATLASEA_expanded.tsv
   source: Declared Status List - ATLASEA
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
   source_description: AtlaSea (France ERGA Partner Branch) Status List, live spreadsheet
   source_contact: "Hugues Roest Crollius, Institut de Biologie de l'ENS (IBENS), France"
 attributes:

diff --git a/sources/status-lists/FILE_BEENOME100.types.yaml b/sources/status-lists/FILE_BEENOME100.types.yaml
@@ -4,7 +4,7 @@ file:
   comment: "#"
   name: BEENOME100_expanded.tsv
   source: Declared Status List - Beenome100
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
   source_description: Declared Status Lists - Beenome 100 - live spreadsheet
   source_contact: Michael Branstetter
 attributes:

diff --git a/sources/status-lists/FILE_CBP_expanded.types.yaml b/sources/status-lists/FILE_CBP_expanded.types.yaml
@@ -4,7 +4,7 @@ file:
   comment: "#"
   name: CBP_expanded.tsv
   source: Declared Status List - CBP
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
   source_description: CBP Status List - Live Spreadsheet - CBP_GOAT
   source_contact: Montserrat Corominas
   source_link: https://dades.biogenoma.cat

diff --git a/sources/status-lists/FILE_DTOL_nhm.types.yaml b/sources/status-lists/FILE_DTOL_nhm.types.yaml
@@ -3,7 +3,7 @@ file:
   header: true
   comment: "#"
   name: nhm.tsv
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
 metadata:
   source_slug:
     header: otherCatalogNumbers

diff --git a/sources/status-lists/FILE_DTOL_sts.types.yaml b/sources/status-lists/FILE_DTOL_sts.types.yaml
@@ -4,7 +4,7 @@ file:
   comment: "#"
   name: sts.tsv
   source: Declared Status Lists - DTOL STS
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
   source_description: Declared Status Lists - DTOL Samples Tracking System
   #source_contact: https://sts.tol.sanger.ac.uk
   source_url: https://sts.tol.sanger.ac.uk/api/v1/swagger

diff --git a/sources/status-lists/FILE_DToL_chordata_collected.types.yaml b/sources/status-lists/FILE_DToL_chordata_collected.types.yaml
@@ -4,7 +4,7 @@ file:
   comment: "#"
   name: DTOL_chordata_collected.tsv
   source: DTOL Chordata Collections List
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
   source_description: DTOL Chordata Working Group, Live Spreadsheet
   source_contact: DTOL Chordates SWG
 attributes:

diff --git a/sources/status-lists/FILE_EBP_Nor_long_list.types.yaml b/sources/status-lists/FILE_EBP_Nor_long_list.types.yaml
@@ -4,7 +4,7 @@ file:
   comment: "#"
   name: EBPN_expanded.tsv
   source: Declared Status Lists - EBPN
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
   source_description: Declared Status Lists - Earth Biogenome Project Norway (EBP-Nor) - live spreadsheet - EBP-Nor_all_goat
   source_contact: Ole K. Tørresen - University of Oslo
 attributes:

diff --git a/sources/status-lists/FILE_ERGA-BGE_Community.types.yaml b/sources/status-lists/FILE_ERGA-BGE_Community.types.yaml
@@ -4,7 +4,7 @@ file:
   comment: "#"
   name: BGE_expanded.tsv
   source: Declared Status List - ERGA-BGE Community Sampling
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
   source_description: ERGA-BGE Community Sampling Status List, live spreadsheet
   source_contact: Thomas Marcussen, University of Oslo, Norway
 attributes:

diff --git a/sources/status-lists/FILE_ERGA-BGE_Greece-Hsp.types.yaml b/sources/status-lists/FILE_ERGA-BGE_Greece-Hsp.types.yaml
@@ -4,7 +4,7 @@ file:
   comment: "#"
   name: GREECE-HSP_expanded.tsv
   source: Declared Status List - ERGA-BGE Hotspots - Greece
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
   source_description: ERGA-BGE Hotspots - Greece Status List, live spreadsheet
   source_contact: Javier Palma, Instituto de Biologia Evolutiva - CSIC, Barcelona, Spain
 attributes:

diff --git a/sources/status-lists/FILE_ERGA-BGE_Slovenia-Hsp.types.yaml b/sources/status-lists/FILE_ERGA-BGE_Slovenia-Hsp.types.yaml
@@ -4,7 +4,7 @@ file:
   comment: "#"
   name: SLOVENIA-HSP_expanded.tsv
   source: Declared Status List - ERGA-BGE Hotspots - Slovenia
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
   source_description: ERGA-BGE Hotspots - Slovenia Status List, live spreadsheet
   source_contact: Javier Palma, Instituto de Biologia Evolutiva - CSIC, Barcelona, Spain
 attributes:

diff --git a/sources/status-lists/FILE_ERGA-BGE_Spain-Hsp.types.yaml b/sources/status-lists/FILE_ERGA-BGE_Spain-Hsp.types.yaml
@@ -4,7 +4,7 @@ file:
   comment: "#"
   name: SPAIN-HSP_expanded.tsv
   source: Declared Status List - ERGA-BGE Hotspots - Spain
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
   source_description: ERGA-BGE Hotspots - Spain Status List, live spreadsheet
   source_contact: Javier Palma, Instituto de Biologia Evolutiva - CSIC, Barcelona, Spain
 attributes:

diff --git a/sources/status-lists/FILE_ERGA-CH.types.yaml b/sources/status-lists/FILE_ERGA-CH.types.yaml
@@ -4,7 +4,7 @@ file:
   comment: "#"
   name: ERGA-CH_expanded.tsv
   source: Declared Status List - ERGA-CH
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
   source_description: ERGA Switzerland Branch Status List, live spreadsheet
   source_contact: Robert Waterhouse, University of Lausanne and Swiss Institute of Bioinformatics, Switzerland
 attributes:

diff --git a/sources/status-lists/FILE_LOEWE-TBG.types.yaml b/sources/status-lists/FILE_LOEWE-TBG.types.yaml
@@ -4,7 +4,7 @@ file:
   comment: "#"
   name: LOEWE-TBG_expanded.tsv
   source: Declared Status List - LOEWE-TBG
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
   source_description: Declared Status List - The LOEWE Centre for Translational Biodiversity Genomics, live spreadsheet - LOEWE-TBG_GoaT
   source_contact: Prof Dr. Michael Hiller, Prof Dr. Miklós Bálint, Senckenberg, Frankfurt, Germany
 attributes:

diff --git a/sources/status-lists/FILE_OTHER_status.types.yaml b/sources/status-lists/FILE_OTHER_status.types.yaml
@@ -4,7 +4,7 @@ file:
   comment: "#"
   name: OTHER_expanded.tsv
   source: Declared Status List - Other Projects
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
   source_description: Declared Status List - Other Projects, Multiple Contributing Labs, live spreadsheet - GoaT_OTHER_projects_subprojects
   source_contact: Individual contributors - see https://docs.google.com/spreadsheets/d/1yOzTrQy231afNA1CVCA9dH0SjB5VyvX12hdiotKPvhY/edit#gid=586527579
   source_url: https://goat.cog.sanger.ac.uk/?shared=sources/status-lists/

diff --git a/sources/status-lists/FILE_eurofish.types.yaml b/sources/status-lists/FILE_eurofish.types.yaml
@@ -4,7 +4,7 @@ file:
   comment: "#"
   name: EUROFISH_expanded.tsv
   source: Declared Status Lists - EUROFISH
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
   source_description: Declared Status List - EUROFISH, live spreadsheet - eurofish_all.tsv
   source_contact: Gene Myers, mpi-cbg.de
 attributes:

diff --git a/sources/status-lists/FILE_jgi1kfg_status.types.yaml b/sources/status-lists/FILE_jgi1kfg_status.types.yaml
@@ -4,7 +4,7 @@ file:
   comment: "#"
   name: jgi_1kfg.tsv
   source: Declared Status List - 1KFG
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
   source_description: Declared Status List - 1KFG, JGI GOLD API StudyId Gs000001
   source_url: https://gold.jgi.doe.gov/projects?page=1&Study.GOLD+Study+ID=Gs0000001&Project.Sequencing+Strategy=Whole+Genome+Sequencing
 attributes:

diff --git a/sources/status-lists/FILE_vgp_table_tracker.types.yaml b/sources/status-lists/FILE_vgp_table_tracker.types.yaml
@@ -4,7 +4,7 @@ file:
   comment: "#"
   name: vgp.tsv
   source: Declared Status List - VGP
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
   source_description: Declared Status List - VGP Project tracker yaml file in github/vgl-hub/genome-portal
   # source_contact:
   source_url: https://github.com/vgl-hub/genome-portal/blob/master/_data/table_tracker.yml

diff --git a/sources/status-lists/FILE_yggdrasil.types.yaml b/sources/status-lists/FILE_yggdrasil.types.yaml
@@ -4,7 +4,7 @@ file:
   comment: "#"
   name: YGG_expanded.tsv
   source: Declared Status List - yggdrasil
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
   source_description: Declared Status List - yggdrasil, live tsv
   source_contact: Sergei Kliver
 attributes:

diff --git a/sources/tolids/name b/sources/tolids/name
@@ -1,2 +1,2 @@
 file:
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
diff --git a/sources/tolids/tolids.names.yaml b/sources/tolids/tolids.names.yaml
@@ -4,7 +4,7 @@ file:
   name: tolids.tsv.gz
   source: dToL sample naming
   source_url: https://id.tol.sanger.ac.uk/
-  source_date: "2024-07-24"
+  source_date: "2024-07-25"
 taxon_names:
   tolid_prefix:
     index: 0