s3_release #508
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| name: s3_release | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: "5 0 * * 1,2,3,4,5,6" # At 00:05 every MTWTFS | |
| env: | |
| DOCKERVERSION: latest | |
| TAXROOT: '["2759"]' | |
| RESOURCES: /home/ubuntu/resources | |
| jobs: | |
| set-variables: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| dockerversion: ${{ steps.dockerversion.outputs.dockerversion }} | |
| release: ${{ steps.release.outputs.release }} | |
| resources: ${{ steps.resources.outputs.resources }} | |
| taxroot: ${{ steps.taxroot.outputs.taxroot }} | |
| steps: | |
| - id: dockerversion | |
| run: | | |
| echo "dockerversion=$DOCKERVERSION" >> $GITHUB_OUTPUT | |
| - id: release | |
| run: | | |
| echo "release=$(date +'%Y.%m.%d')" >> $GITHUB_OUTPUT | |
| - id: resources | |
| run: | | |
| echo "resources=$RESOURCES" >> $GITHUB_OUTPUT | |
| - id: taxroot | |
| run: | | |
| echo "taxroot=$TAXROOT" >> $GITHUB_OUTPUT | |
| fetch-dockers: | |
| runs-on: [self-hosted, runner2] | |
| steps: | |
| - name: Get dockers | |
| run: | | |
| docker system prune -f | |
| docker pull genomehubs/genomehubs:$DOCKERVERSION | |
| docker pull genomehubs/genomehubs-test:$DOCKERVERSION | |
| docker run --rm genomehubs/genomehubs sh -c 'echo $CONTAINER_VERSION' | |
| fetch-resources: | |
| needs: | |
| - set-variables | |
| - fetch-dockers | |
| uses: ./.github/workflows/fetch-resources.yml | |
| with: | |
| dockerversion: ${{ needs.set-variables.outputs.dockerversion }} | |
| resources: ${{ needs.set-variables.outputs.resources }} | |
| taxroot: ${{ needs.set-variables.outputs.taxroot }} | |
| secrets: | |
| JGI_OFFLINE_TOKEN: ${{ secrets.JGI_OFFLINE_TOKEN }} | |
| ORIGINAL2_5_SCHEMA: ${{ secrets.ORIGINAL2_5_SCHEMA }} | |
| STS_AUTHORIZATION_KEY: ${{ secrets.STS_AUTHORIZATION_KEY }} | |
| init-release: | |
| needs: | |
| - set-variables | |
| - fetch-resources | |
| uses: ./.github/workflows/genomehubs-init.yml | |
| with: | |
| dockerversion: ${{ needs.set-variables.outputs.dockerversion }} | |
| release: ${{ needs.set-variables.outputs.release }} | |
| resources: ${{ needs.set-variables.outputs.resources }} | |
| index-directories: | |
| needs: | |
| - set-variables | |
| - init-release | |
| uses: ./.github/workflows/genomehubs-index.yml | |
| with: | |
| dockerversion: ${{ needs.set-variables.outputs.dockerversion }} | |
| release: ${{ needs.set-variables.outputs.release }} | |
| resources: ${{ needs.set-variables.outputs.resources }} | |
| index-files: | |
| needs: | |
| - set-variables | |
| - init-release | |
| uses: ./.github/workflows/genomehubs-index-files.yml | |
| with: | |
| dockerversion: ${{ needs.set-variables.outputs.dockerversion }} | |
| release: ${{ needs.set-variables.outputs.release }} | |
| resources: ${{ needs.set-variables.outputs.resources }} | |
| fill-values: | |
| needs: | |
| - set-variables | |
| - index-directories | |
| uses: ./.github/workflows/genomehubs-fill.yml | |
| with: | |
| dockerversion: ${{ needs.set-variables.outputs.dockerversion }} | |
| release: ${{ needs.set-variables.outputs.release }} | |
| resources: ${{ needs.set-variables.outputs.resources }} | |
| run-tests: | |
| needs: | |
| - set-variables | |
| - fill-values | |
| uses: ./.github/workflows/genomehubs-test.yml | |
| with: | |
| dockerversion: ${{ needs.set-variables.outputs.dockerversion }} | |
| release: ${{ needs.set-variables.outputs.release }} | |
| resources: ${{ needs.set-variables.outputs.resources }} | |
| finish-release: | |
| needs: | |
| - set-variables | |
| - run-tests | |
| uses: ./.github/workflows/finish-release.yml | |
| with: | |
| dockerversion: ${{ needs.set-variables.outputs.dockerversion }} | |
| release: ${{ needs.set-variables.outputs.release }} | |
| resources: ${{ needs.set-variables.outputs.resources }} |