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DO NOT MERGE- Update OBA import #17592

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DO NOT MERGE- Update OBA import #17592

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83 changes: 19 additions & 64 deletions src/ontology/imports/oba_import.obo
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
format-version: 1.2
data-version: go/releases/2017-04-25/imports/oba_import.owl
data-version: go/releases/2019-07-03/imports/oba_import.owl
ontology: go/imports/oba_import

[Term]
Expand All @@ -20,8 +20,6 @@ name: Malpighian tubule size
def: "The size of a Malpighian tubule." []
synonym: "size of Malpighian tubule" EXACT []
is_a: OBA:0000172 ! tube size
is_a: OBA:VT0010454 ! organism trait
is_a: OBA:VT1000777 ! urinary system trait

[Term]
id: OBA:0000009
Expand Down Expand Up @@ -50,9 +48,6 @@ name: angiotensin levels in blood
def: "The amount of a angiotensin II when measured in blood." []
synonym: "blood angiotensin II amount" EXACT []
is_a: OBA:0000079 ! hormone levels
is_a: OBA:VT0010248 ! hemolymphoid system trait
is_a: OBA:VT0010454 ! organism trait
is_a: OBA:VT1000784 ! circulatory system trait

[Term]
id: OBA:0000018
Expand Down Expand Up @@ -88,8 +83,8 @@ is_a: OBA:VT0001614 ! blood vessel morphology trait
id: OBA:0000036
name: body fluid levels
def: "The volume when measured in multicellular organism." []
is_a: OBA:0000001 ! biological attribute
is_a: OBA:VT0010454 ! organism trait
synonym: "multicellular organism volume" EXACT []
is_a: OBA:VT0100005 ! body size trait

[Term]
id: OBA:0000037
Expand All @@ -115,8 +110,6 @@ def: "The membrane potential of a cardiac muscle cell." []
synonym: "membrane potential of cardiac muscle cell" EXACT []
is_a: OBA:0000099 ! membrane potential
is_a: OBA:1000076 ! attribute of cell
is_a: OBA:VT0010454 ! organism trait
is_a: OBA:VT1000784 ! circulatory system trait

[Term]
id: OBA:0000048
Expand All @@ -130,7 +123,7 @@ id: OBA:0000050
name: cell pH
def: "The pH of a cell." []
synonym: "pH of cell" EXACT []
is_a: OBA:0000058 ! cellular pH
is_a: OBA:0000121 ! pH
is_a: OBA:1000076 ! attribute of cell

[Term]
Expand Down Expand Up @@ -174,7 +167,9 @@ is_a: OBA:0100001 ! cellular component attribute
id: OBA:0000058
name: cellular pH
def: "The acidity when measured in cell." []
synonym: "cell acidity" EXACT []
is_a: OBA:0000121 ! pH
is_a: OBA:1000076 ! attribute of cell

[Term]
id: OBA:0000061
Expand Down Expand Up @@ -213,7 +208,6 @@ def: "The microvillus length of a follicle cell." []
synonym: "microvillus length of follicle cell" EXACT []
is_a: OBA:0000055 ! cell size
is_a: OBA:0000102 ! microvillus length
is_a: OBA:VT0010454 ! organism trait

[Term]
id: OBA:0000074
Expand Down Expand Up @@ -255,13 +249,14 @@ name: lung blood pressure
def: "The pressure of a blood when measured in lung." []
synonym: "lung blood pressure" EXACT []
is_a: OBA:VT0000183 ! blood pressure trait
is_a: OBA:VT0005388 ! respiratory system trait

[Term]
id: OBA:0000091
name: lysosomal lumen pH
def: "The acidity when measured in lysosomal lumen." []
synonym: "lysosomal lumen acidity" EXACT []
is_a: OBA:0000050 ! cell pH
is_a: OBA:0000058 ! cellular pH

[Term]
id: OBA:0000092
Expand Down Expand Up @@ -370,8 +365,6 @@ def: "The synaptic plasticity of a neuron." []
synonym: "synaptic plasticity of neuron" EXACT []
is_a: OBA:0000141 ! synaptic plasticity
is_a: OBA:1000076 ! attribute of cell
is_a: OBA:VT0010454 ! organism trait
is_a: OBA:VT1000781 ! nervous/sensory system trait

[Term]
id: OBA:0000116
Expand Down Expand Up @@ -561,7 +554,6 @@ name: urinary volume
def: "The volume of a urine." []
synonym: "volume of urine" EXACT []
is_a: OBA:0000036 ! body fluid levels
is_a: OBA:0100003 ! anatomical entity attribute
is_a: OBA:VT0000056 ! urine trait

[Term]
Expand Down Expand Up @@ -751,8 +743,6 @@ name: lens of camera-type eye quality
def: "The quality of a lens of camera-type eye." []
synonym: "quality of lens of camera-type eye" EXACT []
is_a: OBA:0100003 ! anatomical entity attribute
is_a: OBA:VT0010454 ! organism trait
is_a: OBA:VT0015074 ! organ system trait

[Term]
id: OBA:1001065
Expand All @@ -765,34 +755,29 @@ is_a: OBA:1000076 ! attribute of cell
id: OBA:VT0000056
name: urine trait
def: "The quality when measured in urine." []
synonym: "urine quality" EXACT []
is_a: OBA:0100003 ! anatomical entity attribute

[Term]
id: OBA:VT0000183
name: blood pressure trait
def: "The pressure of a blood." []
synonym: "pressure of blood" EXACT []
is_a: OBA:0100003 ! anatomical entity attribute
is_a: OBA:VT0010248 ! hemolymphoid system trait
is_a: OBA:VT0010454 ! organism trait
is_a: OBA:VT1000784 ! circulatory system trait

[Term]
id: OBA:VT0000832
name: thalamus morphology trait
def: "The morphology of a dorsal plus ventral thalamus." []
synonym: "morphology of dorsal plus ventral thalamus" EXACT []
is_a: OBA:0100003 ! anatomical entity attribute
is_a: OBA:VT0010454 ! organism trait
is_a: OBA:VT1000781 ! nervous/sensory system trait

[Term]
id: OBA:VT0001614
name: blood vessel morphology trait
def: "The morphology of a blood vessel." []
synonym: "morphology of blood vessel" EXACT []
is_a: OBA:0100003 ! anatomical entity attribute
is_a: OBA:VT0010454 ! organism trait
is_a: OBA:VT1000784 ! circulatory system trait

[Term]
id: OBA:VT0002121
Expand All @@ -807,8 +792,6 @@ name: kidney morphology trait
def: "The morphology of a kidney." []
synonym: "morphology of kidney" EXACT []
is_a: OBA:0100003 ! anatomical entity attribute
is_a: OBA:VT0010454 ! organism trait
is_a: OBA:VT1000777 ! urinary system trait

[Term]
id: OBA:VT0002706
Expand All @@ -824,14 +807,6 @@ name: respiratory conducting tube morphology trait
def: "The morphology of a respiratory tube." []
synonym: "morphology of respiratory tube" EXACT []
is_a: OBA:0100003 ! anatomical entity attribute
is_a: OBA:VT0005388 ! respiratory system trait
is_a: OBA:VT0010454 ! organism trait

[Term]
id: OBA:VT0005388
name: respiratory system trait
def: "The quality when measured in respiratory system." []
is_a: OBA:VT0015074 ! organ system trait

[Term]
id: OBA:VT0005404
Expand All @@ -840,16 +815,12 @@ def: "The morphology of a axon." []
synonym: "morphology of axon" EXACT []
is_a: OBA:VT0015108 ! neurite morphology trait

[Term]
id: OBA:VT0010248
name: hemolymphoid system trait
def: "The quality when measured in hemolymphoid system." []
is_a: OBA:VT0015074 ! organ system trait

[Term]
id: OBA:VT0010454
name: organism trait
def: "The quality when measured in multicellular organism." []
synonym: "multicellular organism quality" EXACT []
is_a: OBA:0100003 ! anatomical entity attribute

[Term]
id: OBA:VT0015071
Expand All @@ -858,11 +829,6 @@ def: "The morphology of a appendage." []
synonym: "morphology of appendage" EXACT []
is_a: OBA:1000099 ! appendage trait

[Term]
id: OBA:VT0015074
name: organ system trait
def: "The quality when measured in anatomical system." []

[Term]
id: OBA:VT0015108
name: neurite morphology trait
Expand All @@ -876,6 +842,13 @@ name: organism subdivision trait
def: "The quality of a organism subdivision." []
synonym: "quality of organism subdivision" EXACT []
is_a: OBA:0100003 ! anatomical entity attribute

[Term]
id: OBA:VT0100005
name: body size trait
def: "The size of a multicellular organism." []
synonym: "size of multicellular organism" EXACT []
is_a: OBA:0000015 ! anatomical structure size
is_a: OBA:VT0010454 ! organism trait

[Term]
Expand All @@ -885,24 +858,6 @@ def: "The quality of a growth." []
synonym: "quality of growth" EXACT []
is_a: OBA:0100002 ! biological process attribute

[Term]
id: OBA:VT1000777
name: urinary system trait
def: "The quality when measured in renal system." []
is_a: OBA:VT0015074 ! organ system trait

[Term]
id: OBA:VT1000781
name: nervous/sensory system trait
def: "The quality when measured in nervous system." []
is_a: OBA:VT0015074 ! organ system trait

[Term]
id: OBA:VT1000784
name: circulatory system trait
def: "The quality when measured in circulatory system." []
is_a: OBA:VT0015074 ! organ system trait

[Term]
id: OBA:VT2000000
name: arterial blood pressure trait
Expand Down
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