[create-pull-request] automated change

geneontology · Jul 11, 2023 · 99daa1d · 99daa1d · github-actions · Jul 11, 2023
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diff --git a/src/design_patterns/catabolic_process.tsv b/src/design_patterns/catabolic_process.tsv
@@ -699,7 +699,6 @@ http://purl.obolibrary.org/obo/GO_0019323	pentose catabolic process	http://purl.
 http://purl.obolibrary.org/obo/GO_0030652	peptide antibiotic catabolic process	http://purl.obolibrary.org/obo/CHEBI_25903	peptide antibiotic
 http://purl.obolibrary.org/obo/GO_0043171	peptide catabolic process	http://purl.obolibrary.org/obo/CHEBI_16670	peptide
 http://purl.obolibrary.org/obo/GO_0009253	peptidoglycan catabolic process	http://purl.obolibrary.org/obo/CHEBI_8005	peptidoglycan
-http://purl.obolibrary.org/obo/GO_0017184	peptidyl-diphthamide catabolic process	http://purl.obolibrary.org/obo/CHEBI_16692	diphthamide residue
 http://purl.obolibrary.org/obo/GO_0042216	phenanthrene catabolic process	http://purl.obolibrary.org/obo/CHEBI_28851	phenanthrene
 http://purl.obolibrary.org/obo/GO_0072392	phenol catabolic process	http://purl.obolibrary.org/obo/CHEBI_15882	phenol
 http://purl.obolibrary.org/obo/GO_0019336	phenol-containing compound catabolic process	http://purl.obolibrary.org/obo/CHEBI_33853	phenols

diff --git a/src/design_patterns/metabolic_process.tsv b/src/design_patterns/metabolic_process.tsv
@@ -964,7 +964,6 @@ http://purl.obolibrary.org/obo/GO_0019321	pentose metabolic process	http://purl.
 http://purl.obolibrary.org/obo/GO_0030650	peptide antibiotic metabolic process	http://purl.obolibrary.org/obo/CHEBI_25903	peptide antibiotic
 http://purl.obolibrary.org/obo/GO_0006518	peptide metabolic process	http://purl.obolibrary.org/obo/CHEBI_16670	peptide
 http://purl.obolibrary.org/obo/GO_0000270	peptidoglycan metabolic process	http://purl.obolibrary.org/obo/CHEBI_8005	peptidoglycan
-http://purl.obolibrary.org/obo/GO_0017182	peptidyl-diphthamide metabolic process	http://purl.obolibrary.org/obo/CHEBI_16692	diphthamide residue
 http://purl.obolibrary.org/obo/GO_0018955	phenanthrene metabolic process	http://purl.obolibrary.org/obo/CHEBI_28851	phenanthrene
 http://purl.obolibrary.org/obo/GO_0072390	phenol metabolic process	http://purl.obolibrary.org/obo/CHEBI_15882	phenol
 http://purl.obolibrary.org/obo/GO_0018958	phenol-containing compound metabolic process	http://purl.obolibrary.org/obo/CHEBI_33853	phenols

diff --git a/src/design_patterns/negative_regulation.tsv b/src/design_patterns/negative_regulation.tsv
@@ -1766,7 +1766,7 @@ http://purl.obolibrary.org/obo/GO_2000626	negative regulation of miRNA catabolic
 http://purl.obolibrary.org/obo/GO_2000629	negative regulation of miRNA metabolic process	http://purl.obolibrary.org/obo/GO_0010586	miRNA metabolic process
 http://purl.obolibrary.org/obo/GO_1903799	negative regulation of miRNA processing	http://purl.obolibrary.org/obo/GO_0035196	miRNA processing
 http://purl.obolibrary.org/obo/GO_1902894	negative regulation of miRNA transcription	http://purl.obolibrary.org/obo/GO_0061614	miRNA transcription
-http://purl.obolibrary.org/obo/GO_0060965	negative regulation of miRNA-mediated gene silencing	http://purl.obolibrary.org/obo/GO_0035195	miRNA-mediated gene silencing
+http://purl.obolibrary.org/obo/GO_0060965	negative regulation of miRNA-mediated gene silencing	http://purl.obolibrary.org/obo/GO_0035195	miRNA-mediated post-transcriptional gene silencing
 http://purl.obolibrary.org/obo/GO_0014007	negative regulation of microglia differentiation	http://purl.obolibrary.org/obo/GO_0014004	microglia differentiation
 http://purl.obolibrary.org/obo/GO_1903979	negative regulation of microglial cell activation	http://purl.obolibrary.org/obo/GO_0001774	microglial cell activation
 http://purl.obolibrary.org/obo/GO_1904150	negative regulation of microglial cell mediated cytotoxicity	http://purl.obolibrary.org/obo/GO_0090634	microglial cell mediated cytotoxicity

diff --git a/src/design_patterns/positive_regulation.tsv b/src/design_patterns/positive_regulation.tsv
@@ -1745,7 +1745,7 @@ http://purl.obolibrary.org/obo/GO_2000627	positive regulation of miRNA catabolic
 http://purl.obolibrary.org/obo/GO_2000630	positive regulation of miRNA metabolic process	http://purl.obolibrary.org/obo/GO_0010586	miRNA metabolic process
 http://purl.obolibrary.org/obo/GO_1903800	positive regulation of miRNA processing	http://purl.obolibrary.org/obo/GO_0035196	miRNA processing
 http://purl.obolibrary.org/obo/GO_1902895	positive regulation of miRNA transcription	http://purl.obolibrary.org/obo/GO_0061614	miRNA transcription
-http://purl.obolibrary.org/obo/GO_2000637	positive regulation of miRNA-mediated gene silencing	http://purl.obolibrary.org/obo/GO_0035195	miRNA-mediated gene silencing
+http://purl.obolibrary.org/obo/GO_2000637	positive regulation of miRNA-mediated gene silencing	http://purl.obolibrary.org/obo/GO_0035195	miRNA-mediated post-transcriptional gene silencing
 http://purl.obolibrary.org/obo/GO_0014008	positive regulation of microglia differentiation	http://purl.obolibrary.org/obo/GO_0014004	microglia differentiation
 http://purl.obolibrary.org/obo/GO_1903980	positive regulation of microglial cell activation	http://purl.obolibrary.org/obo/GO_0001774	microglial cell activation
 http://purl.obolibrary.org/obo/GO_1904151	positive regulation of microglial cell mediated cytotoxicity	http://purl.obolibrary.org/obo/GO_0090634	microglial cell mediated cytotoxicity

diff --git a/src/design_patterns/regulation.tsv b/src/design_patterns/regulation.tsv
@@ -1971,7 +1971,7 @@ http://purl.obolibrary.org/obo/GO_2000625	regulation of miRNA catabolic process
 http://purl.obolibrary.org/obo/GO_2000628	regulation of miRNA metabolic process	http://purl.obolibrary.org/obo/GO_0010586	miRNA metabolic process
 http://purl.obolibrary.org/obo/GO_1903798	regulation of miRNA processing	http://purl.obolibrary.org/obo/GO_0035196	miRNA processing
 http://purl.obolibrary.org/obo/GO_1902893	regulation of miRNA transcription	http://purl.obolibrary.org/obo/GO_0061614	miRNA transcription
-http://purl.obolibrary.org/obo/GO_0060964	regulation of miRNA-mediated gene silencing	http://purl.obolibrary.org/obo/GO_0035195	miRNA-mediated gene silencing
+http://purl.obolibrary.org/obo/GO_0060964	regulation of miRNA-mediated gene silencing	http://purl.obolibrary.org/obo/GO_0035195	miRNA-mediated post-transcriptional gene silencing
 http://purl.obolibrary.org/obo/GO_0014006	regulation of microglia differentiation	http://purl.obolibrary.org/obo/GO_0014004	microglia differentiation
 http://purl.obolibrary.org/obo/GO_1903978	regulation of microglial cell activation	http://purl.obolibrary.org/obo/GO_0001774	microglial cell activation
 http://purl.obolibrary.org/obo/GO_1904149	regulation of microglial cell mediated cytotoxicity	http://purl.obolibrary.org/obo/GO_0090634	microglial cell mediated cytotoxicity

diff --git a/src/design_patterns/regulation_by.tsv b/src/design_patterns/regulation_by.tsv
@@ -1863,7 +1863,7 @@ http://purl.obolibrary.org/obo/GO_2000625	regulation of miRNA catabolic process
 http://purl.obolibrary.org/obo/GO_2000628	regulation of miRNA metabolic process	http://purl.obolibrary.org/obo/GO_0065007	biological regulation	http://purl.obolibrary.org/obo/GO_0010586	miRNA metabolic process
 http://purl.obolibrary.org/obo/GO_1903798	regulation of miRNA processing	http://purl.obolibrary.org/obo/GO_0065007	biological regulation	http://purl.obolibrary.org/obo/GO_0035196	miRNA processing
 http://purl.obolibrary.org/obo/GO_1902893	regulation of miRNA transcription	http://purl.obolibrary.org/obo/GO_0065007	biological regulation	http://purl.obolibrary.org/obo/GO_0061614	miRNA transcription
-http://purl.obolibrary.org/obo/GO_0060964	regulation of miRNA-mediated gene silencing	http://purl.obolibrary.org/obo/GO_0065007	biological regulation	http://purl.obolibrary.org/obo/GO_0035195	miRNA-mediated gene silencing
+http://purl.obolibrary.org/obo/GO_0060964	regulation of miRNA-mediated gene silencing	http://purl.obolibrary.org/obo/GO_0065007	biological regulation	http://purl.obolibrary.org/obo/GO_0035195	miRNA-mediated post-transcriptional gene silencing
 http://purl.obolibrary.org/obo/GO_0014006	regulation of microglia differentiation	http://purl.obolibrary.org/obo/GO_0065007	biological regulation	http://purl.obolibrary.org/obo/GO_0014004	microglia differentiation
 http://purl.obolibrary.org/obo/GO_1903978	regulation of microglial cell activation	http://purl.obolibrary.org/obo/GO_0065007	biological regulation	http://purl.obolibrary.org/obo/GO_0001774	microglial cell activation
 http://purl.obolibrary.org/obo/GO_1904149	regulation of microglial cell mediated cytotoxicity	http://purl.obolibrary.org/obo/GO_0065007	biological regulation	http://purl.obolibrary.org/obo/GO_0090634	microglial cell mediated cytotoxicity

diff --git a/src/ontology/imports/go-pattern-conformance.ttl b/src/ontology/imports/go-pattern-conformance.ttl
@@ -9517,12 +9517,6 @@
 <http://purl.obolibrary.org/obo/GO_0017166> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/binding.yaml> .
 
 
-<http://purl.obolibrary.org/obo/GO_0017182> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/metabolic_process.yaml> .
-
-
-<http://purl.obolibrary.org/obo/GO_0017184> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/catabolic_process.yaml> .
-
-
 <http://purl.obolibrary.org/obo/GO_0018130> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/biosynthetic_process.yaml> .