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protein-glycine ligase activitydefinition "Catalysis of the posttranslational transfer of one or more glycine residues to a specific glutamate residue on a target protein."
proton-transporting ATP synthase activity, rotational mechanismdefinition "Enables the synthesis of ATP from ADP and phosphate by the transfer of protons from one side of a membrane to the other by a rotational mechanism driven by a gradient according to the reaction: ADP + H2O + phosphate + H+(in) -> ATP + H+(out)."
proton-transporting ATP synthase activity, rotational mechanismdefinition "Enables the synthesis of ATP from ADP and phosphate by the transfer of protons from one side of a membrane to the other by a rotational mechanism driven by a gradient according to the reaction: ADP + H2O + phosphate + H+(in) -> ATP + H+(out)."
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Here's a diff of how these changes impact the classified ontology:
Ontology comparison
Left
http://purl.obolibrary.org/obo/go.owlhttp://purl.obolibrary.org/obo/go/releases/2023-07-14/go.owlfile:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owlRight
http://purl.obolibrary.org/obo/go.owlhttp://purl.obolibrary.org/obo/go/releases/2023-07-14/go.owlfile:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owlOntology imports
Ontology annotations
cytosolic tRNA wobble base thiouridylase complex
http://purl.obolibrary.org/obo/GO_0002144Removed
Added
peptidyl-proline 4-dioxygenase activity
http://purl.obolibrary.org/obo/GO_0031545Added
protein-glycine ligase activity
http://purl.obolibrary.org/obo/GO_0070735Removed
database_cross_reference "GOC:mah"
database_cross_reference "PMID:19524510"
Added
protein-glycine ligase activity definition "ATP + glycine + L-glutamyl-[protein] = ADP + glycyl-L-glutamyl-[protein] + H+ + phosphate."
protein-glycine ligase activity database_cross_reference "RHEA:67180"
protein-glycine ligase activity term tracker item "https://github.com/geneontology/go-ontology/issues/25720"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
proton-transporting ATP synthase activity, rotational mechanism
http://purl.obolibrary.org/obo/GO_0046933Removed
proton-transporting ATP synthase activity, rotational mechanism has_exact_synonym "hydrogen ion translocating F-type ATPase activity"
proton-transporting ATP synthase activity, rotational mechanism definition "Enables the synthesis of ATP from ADP and phosphate by the transfer of protons from one side of a membrane to the other by a rotational mechanism driven by a gradient according to the reaction: ADP + H2O + phosphate + H+(in) -> ATP + H+(out)."
proton-transporting ATP synthase activity, rotational mechanism has_exact_synonym "hydrogen ion transporting two-sector ATPase activity"
Added
proton-transporting ATP synthase activity, rotational mechanism definition "Enables the synthesis of ATP from ADP and phosphate by the transfer of protons from one side of a membrane to the other by a rotational mechanism driven by a gradient according to the reaction: ADP + H2O + phosphate + H+(in) -> ATP + H+(out)."
proton-transporting ATP synthase activity, rotational mechanism term tracker item "https://github.com/geneontology/go-ontology/issues/25727"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
proton-transporting ATPase activity, rotational mechanism
http://purl.obolibrary.org/obo/GO_0046961Removed
Added
tRNA (cytosine-3-)-methyltransferase activity
http://purl.obolibrary.org/obo/GO_0052735Removed
database_cross_reference "PMID:21518804"
database_cross_reference "PMID:21518805"
Added
tRNA (cytosine-3-)-methyltransferase activity term tracker item "https://github.com/geneontology/go-ontology/issues/25722"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
tRNA (cytosine-3-)-methyltransferase activity database_cross_reference "RHEA:60908"
tRNA (cytosine-3-)-methyltransferase activity definition "Catalysis of the reaction: a cytidine in tRNA + S-adenosyl-L-methionine = an N3-methylcytidine in tRNA + H+ + S-adenosyl-L-homocysteine."