[create-pull-request] automated change (#29006)

Co-authored-by: balhoff <[email protected]>
geneontology · Oct 3, 2024 · 1a9d29d · 1a9d29d
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Showing 7 changed files with 3 additions and 39 deletions.
diff --git a/docs/patterns/multi_organism_process.md b/docs/patterns/multi_organism_process.md
@@ -29,7 +29,7 @@ TODO
 
 ## Equivalent to
 
-`{process}`  and ([bearer of](http://purl.obolibrary.org/obo/RO_0000053) some [PATO_0002486](http://purl.obolibrary.org/obo/PATO_0002486))
+`{process}`  and ([has characteristic](http://purl.obolibrary.org/obo/RO_0000053) some [PATO_0002486](http://purl.obolibrary.org/obo/PATO_0002486))
 
 
 

diff --git a/docs/patterns/protein_complex_by_activity.md b/docs/patterns/protein_complex_by_activity.md
@@ -29,7 +29,7 @@ TODO
 
 ## Equivalent to
 
-[protein-containing complex](http://purl.obolibrary.org/obo/GO_0032991)  and ([capable of](http://purl.obolibrary.org/obo/RO_0002215) some `{function}`)
+[protein-containing complex](http://purl.obolibrary.org/obo/GO_0032991)  and ([capable_of](http://purl.obolibrary.org/obo/RO_0002215) some `{function}`)
 
 
 

diff --git a/docs/patterns/single_organism_process.md b/docs/patterns/single_organism_process.md
@@ -29,7 +29,7 @@ TODO
 
 ## Equivalent to
 
-`{process}`  and ([bearer of](http://purl.obolibrary.org/obo/RO_0000053) some [single organismal process quality](http://purl.obolibrary.org/obo/PATO_0002487))
+`{process}`  and ([has characteristic](http://purl.obolibrary.org/obo/RO_0000053) some [single organismal process quality](http://purl.obolibrary.org/obo/PATO_0002487))
 
 
 

diff --git a/src/design_patterns/negative_regulation.tsv b/src/design_patterns/negative_regulation.tsv
@@ -825,9 +825,6 @@ http://purl.obolibrary.org/obo/GO_2000955	negative regulation of cyclodextrin me
 http://purl.obolibrary.org/obo/GO_1904042	negative regulation of cystathionine beta-synthase activity	http://purl.obolibrary.org/obo/GO_0004122	cystathionine beta-synthase activity
 http://purl.obolibrary.org/obo/GO_1901495	negative regulation of cysteine metabolic process	http://purl.obolibrary.org/obo/GO_0006534	cysteine metabolic process
 http://purl.obolibrary.org/obo/GO_2000117	negative regulation of cysteine-type endopeptidase activity	http://purl.obolibrary.org/obo/GO_0004197	cysteine-type endopeptidase activity
-http://purl.obolibrary.org/obo/GO_0043154	negative regulation of cysteine-type endopeptidase activity involved in apoptotic process	http://purl.obolibrary.org/obo/GO_0097153	cysteine-type endopeptidase activity involved in apoptotic process
-http://purl.obolibrary.org/obo/GO_2001268	negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway	http://purl.obolibrary.org/obo/GO_0097199	cysteine-type endopeptidase activity involved in apoptotic signaling pathway
-http://purl.obolibrary.org/obo/GO_2001271	negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis	http://purl.obolibrary.org/obo/GO_0097200	cysteine-type endopeptidase activity involved in execution phase of apoptosis
 http://purl.obolibrary.org/obo/GO_0060302	negative regulation of cytokine activity	http://purl.obolibrary.org/obo/GO_0005125	cytokine activity
 http://purl.obolibrary.org/obo/GO_0001818	negative regulation of cytokine production	http://purl.obolibrary.org/obo/GO_0001816	cytokine production
 http://purl.obolibrary.org/obo/GO_0002719	negative regulation of cytokine production involved in immune response	http://purl.obolibrary.org/obo/GO_0002367	cytokine production involved in immune response

diff --git a/src/design_patterns/positive_regulation.tsv b/src/design_patterns/positive_regulation.tsv
@@ -817,9 +817,6 @@ http://purl.obolibrary.org/obo/GO_2000959	positive regulation of cyclodextrin ca
 http://purl.obolibrary.org/obo/GO_2000956	positive regulation of cyclodextrin metabolic process	http://purl.obolibrary.org/obo/GO_2000900	cyclodextrin metabolic process
 http://purl.obolibrary.org/obo/GO_1901496	positive regulation of cysteine metabolic process	http://purl.obolibrary.org/obo/GO_0006534	cysteine metabolic process
 http://purl.obolibrary.org/obo/GO_2001056	positive regulation of cysteine-type endopeptidase activity	http://purl.obolibrary.org/obo/GO_0004197	cysteine-type endopeptidase activity
-http://purl.obolibrary.org/obo/GO_0043280	positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	http://purl.obolibrary.org/obo/GO_0097153	cysteine-type endopeptidase activity involved in apoptotic process
-http://purl.obolibrary.org/obo/GO_2001269	positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway	http://purl.obolibrary.org/obo/GO_0097199	cysteine-type endopeptidase activity involved in apoptotic signaling pathway
-http://purl.obolibrary.org/obo/GO_2001272	positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis	http://purl.obolibrary.org/obo/GO_0097200	cysteine-type endopeptidase activity involved in execution phase of apoptosis
 http://purl.obolibrary.org/obo/GO_1904960	positive regulation of cytochrome-c oxidase activity	http://purl.obolibrary.org/obo/GO_0004129	cytochrome-c oxidase activity
 http://purl.obolibrary.org/obo/GO_0060301	positive regulation of cytokine activity	http://purl.obolibrary.org/obo/GO_0005125	cytokine activity
 http://purl.obolibrary.org/obo/GO_0001819	positive regulation of cytokine production	http://purl.obolibrary.org/obo/GO_0001816	cytokine production

diff --git a/src/design_patterns/regulation.tsv b/src/design_patterns/regulation.tsv
@@ -944,9 +944,6 @@ http://purl.obolibrary.org/obo/GO_2000954	regulation of cyclodextrin metabolic p
 http://purl.obolibrary.org/obo/GO_1904041	regulation of cystathionine beta-synthase activity	http://purl.obolibrary.org/obo/GO_0004122	cystathionine beta-synthase activity
 http://purl.obolibrary.org/obo/GO_1901494	regulation of cysteine metabolic process	http://purl.obolibrary.org/obo/GO_0006534	cysteine metabolic process
 http://purl.obolibrary.org/obo/GO_2000116	regulation of cysteine-type endopeptidase activity	http://purl.obolibrary.org/obo/GO_0004197	cysteine-type endopeptidase activity
-http://purl.obolibrary.org/obo/GO_0043281	regulation of cysteine-type endopeptidase activity involved in apoptotic process	http://purl.obolibrary.org/obo/GO_0097153	cysteine-type endopeptidase activity involved in apoptotic process
-http://purl.obolibrary.org/obo/GO_2001267	regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway	http://purl.obolibrary.org/obo/GO_0097199	cysteine-type endopeptidase activity involved in apoptotic signaling pathway
-http://purl.obolibrary.org/obo/GO_2001270	regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis	http://purl.obolibrary.org/obo/GO_0097200	cysteine-type endopeptidase activity involved in execution phase of apoptosis
 http://purl.obolibrary.org/obo/GO_1904959	regulation of cytochrome-c oxidase activity	http://purl.obolibrary.org/obo/GO_0004129	cytochrome-c oxidase activity
 http://purl.obolibrary.org/obo/GO_0060300	regulation of cytokine activity	http://purl.obolibrary.org/obo/GO_0005125	cytokine activity
 http://purl.obolibrary.org/obo/GO_0001817	regulation of cytokine production	http://purl.obolibrary.org/obo/GO_0001816	cytokine production

diff --git a/src/ontology/imports/go-pattern-conformance.ttl b/src/ontology/imports/go-pattern-conformance.ttl
@@ -20757,9 +20757,6 @@
 <http://purl.obolibrary.org/obo/GO_0043151> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/involved_in_x_y.yaml> .
 
 
-<http://purl.obolibrary.org/obo/GO_0043154> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/negative_regulation.yaml> .
-
-
 <http://purl.obolibrary.org/obo/GO_0043155> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/negative_regulation.yaml> .
 
 
@@ -20903,12 +20900,6 @@
 <http://purl.obolibrary.org/obo/GO_0043279> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/response_to_stimulus_by_stimulus.yaml> .
 
 
-<http://purl.obolibrary.org/obo/GO_0043280> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/positive_regulation.yaml> .
-
-
-<http://purl.obolibrary.org/obo/GO_0043281> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/regulation.yaml> .
-
-
 <http://purl.obolibrary.org/obo/GO_0043282> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/anatomical_structure_development.yaml> .
 
 
@@ -58074,24 +58065,6 @@
 <http://purl.obolibrary.org/obo/GO_2001266> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/involved_in_x_y.yaml> .
 
 
-<http://purl.obolibrary.org/obo/GO_2001267> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/regulation.yaml> .
-
-
-<http://purl.obolibrary.org/obo/GO_2001268> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/negative_regulation.yaml> .
-
-
-<http://purl.obolibrary.org/obo/GO_2001269> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/positive_regulation.yaml> .
-
-
-<http://purl.obolibrary.org/obo/GO_2001270> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/regulation.yaml> .
-
-
-<http://purl.obolibrary.org/obo/GO_2001271> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/negative_regulation.yaml> .
-
-
-<http://purl.obolibrary.org/obo/GO_2001272> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/positive_regulation.yaml> .
-
-
 <http://purl.obolibrary.org/obo/GO_2001276> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/regulation.yaml> ,
                                                                                   <http://purl.obolibrary.org/obo/go/patterns/regulation_by.yaml> .