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Lucuma Observing Database

This is the Postgres-backed observing database for GPP, under construction.

Working on the Database Schema

The highlights:

  • Step 1 is chmod 0600 test-cert/*
  • To start up a local database and a simple web UI: docker-compose up -d ... if stuff doesn't seem to work drop the -d and see what's going on. You can then ^C out of it and try again.
  • The database will be created and initialized if it doesn't yet exist.
  • The Schema is defined by .sql files in modules/service/src/main/resources/db/migration/.
  • To inspect the database using a web UI, go here
  • The password for user jimmy is banana.
  • To connect using psql (if you have it): psql -h localhost -U jimmy -d lucuma-odb
  • To connect using psql (if you don't have it): docker-compose run db psql -h db -U jimmy -d lucuma-odb
  • To build a nice documentation website, look in schemaapy/
  • To stop the database (and the web UI): docker-compose stop
  • To stop and delete the database (and the web UI): docker-compose down

To work on the schema I just do docker-compose down; docker-compose up to wipe it and rebuild from the schema. Any errors will be reported on the console. For now we're not worried about migrations so files can be edited arbitrarily. Once we're deployed migrations will need to be append-only.

Running the App

The application assumes that you have an empty database initially and by default runs migrations to set it up. This will fail if you have followed the instructions above and used docker-compose up because Flyway, the database migration tool, has no record of having run before and tries to create tables that already exist.

To get an empty database you can start the docker container as above and then do this:

psql -h localhost -U jimmy -d postgres -e -c 'drop database "lucuma-odb"'
psql -h localhost -U jimmy -d postgres -e -c 'create database "lucuma-odb"'

You can now run the app, and you can do docker-compose stop. If you do down and then up though you'll need to clear out the db again.

Using reStart

Alternatively, you can run the app from within SBT with service/reStart (stopping with service/reStop). By default, this command will fail after running docker-compose down and then up as described above. You can supply optional arguments to simplify development though:

  • --reset - Drops then creates the database for you. Do this after cycling docker-compose down, up to give flyway a chance to run the migration and update its schema table.
  • --skip-migration - Skips the database migration. This assumes that the database has been initialized already. Usually this won't be necessary since flyway already skips migrations that have previously run.

S3/Cloudcube

We are using the Cloudcube heroku addon for accessing S3. In Heroku, the addon sets the environment variables for us. However, when running locally these are what needs to be set. If you want to actually upload/download attachments, you can get the real values from the staging app in Heroku. Otherwise, you can use these as dummy values

There is also a required environment variable that sets the maximum file upload size

  • FILE_UPLOAD_MAX_MB = 20

Testing Migrations

If you're adding migration scripts you should ensure that they will run correctly on a populated database. There is a populate-db-from-dev.sh script, but currently it will fail in the restore step due to pg_dump wiping out the search path. To work around this, the full procedure is:

  1. Create the binary database dump.
heroku pg:backups:capture --app lucuma-postgres-odb-dev
heroku pg:backups:download --app lucuma-postgres-odb-dev --output /tmp/lucuma-postgres-odb-dev.dump
  1. Convert the dump to text SQL commands.
pg_restore --verbose --clean --no-acl --no-owner --if-exists --no-comments -f ~/dump.sql /tmp/lucuma-postgres-odb-dev.dump
  1. Edit the .sql file commenting out the following line:
SELECT pg_catalog.set_config('search_path', '', false);

This permits functions to find types that haven't been prefixed with the schema name.

  1. Clean the database.
docker-compose down
docker-compose up
  1. Connect with psql (to postgres database) and drop and recreate the lucuma-odb database
psql -h localhost -U jimmy -d postgres

then

# drop database "lucuma-odb";
# create database "lucuma-odb";
^C
  1. Use psql to restore the database.
psql -h localhost -U jimmy -d lucuma-odb -f ~/dump.sql 

At this point the database is running locally with the data as it exists in main and any new migrations are ready to run when the application starts.

  1. Start the application in sbt. This will cause the new migration to run and any errors will be revealed.
service/reStart

Mailgun

We are using the Mailgun heroku addon for sending and tracking emails.

If you need to install Mailgun in a new app, you can do so via:

heroku addons:create mailgun:Starter --app <APP NAME>

The addon manages the mailgun users so that anyone with access to the app on heroku can go to the mailgun dashboard by clicking on Mailgun in the app resources. It also sets some of the required config variables. However, some will need to be added/updated as described below.

The setup a custom domain in mailgun, go to the mailgun dashboard and navigate to Sending > Domains, click the Add Domain button and follow the directions. Note that only the TXT records (SPF and DKIM) need to be set as we are not receiving mail or trying to track user opens and clicks.

You will need to change the MAILGUN_DOMAIN config variable to point to the new domain. Like:

MAILGUN_DOMAIN=mail.odb-dev.lucuma.xyz

In order to receive the webhook events that track the status of the email (Accepted, Delivered, Permanent Failure, Temporary Failure), do the following:

  • In the mailgun dashboard go to Sending > Webhooks and create a new webhook signing key.
  • Set the MAILGUN_WEBHOOK_SIGNING_KEY config variable in the herok app to the key you created.
  • Back in the dashboard, with the proper domain selected in the upper right, use the Add webhook button to add webhooks for accepted, delivered, permanent_fail, and temporary_fail. The url is the url for the heroku app, plus /mailgun. For example https://lucuma-postgres-odb-dev.herokuapp.com/mailgun.

Two more config variables are required:

  • INVITATION_SENDER_EMAIL - this should be some user in the MAILGUN_DOMAIN. For example [email protected]. This will be the sender of the invitation emails.
  • EXPLORE_URL - The url of the Explore instance for this version of the ODB. For example https://explore-dev.lucuma.xyz. This is used to put a link to explore in the invitation emails.

To run the odb locally, the environment variables in this section must be set or the odb will fail when loading the configuration. Here is the complete list with some example values.

  • MAILGUN_API_KEY= (A valid key can be obtained from the heroku app if you want to be able to send email)
  • MAILGUN_DOMAIN=mail.odb-dev.lucuma.xyz
  • MAILGUN_WEBHOOK_SIGNING_KEY= (Can be anything, since webhooks won't be received locally)
  • INVITATION_SENDER_EMAIL=[email protected]
  • EXPLORE_URL=https://explore-dev.lucuma.xyz

Mailgun sets other variables in the Heroku app, but they are for things we are not using.

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