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@gbouras13 gbouras13 released this 02 Jun 05:59
· 127 commits to main since this release
v1.1.0
b5f8b1a
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Learn about vigilant mode.
  • Refactored codebase and release on pypi
  • Adds unit tests and CI
  • Replace argparse with click
  • Breaking CLI changes to be compatible with click
  • plassembler.py changed to plassembler run
  • Adds Raven long read assembly option to plassembler run using --use_raven
  • Adds option to skip chopper and fastq to plassembler run using --skip_qc
  • install_database.py changed to plassembler download
  • Assembled mode now plassembler assembled
  • Untested/experimental long read only mode using plassembler long
  • Removes rasusa, -s and --no_subsample from v1.1.0. If users want faster runtimes, we recommend --use_raven or conduct subsampling prior.
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