.github/workflows/run.yml #21
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| on: | |
| push: | |
| schedule: | |
| - cron: '53 20 * * 4' # every Thursday | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| name: run R script | |
| env: | |
| GBIF_USER: ${{ secrets.GBIF_USER }} | |
| GBIF_PWD: ${{ secrets.GBIF_PWD }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: '4.2.2' | |
| - run: Rscript -e 'print("hello")' | |
| - name: Cache R packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-2-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-2- | |
| - name: Install pak | |
| run: | | |
| install.packages("pak", repos = "https://r-lib.github.io/p/pak/devel/") | |
| shell: Rscript {0} | |
| - name: Install dependencies | |
| run: | | |
| pak::pkg_install("jhnwllr/gbifmt") | |
| pak::pkg_install(c("httr2","tibble","tidyr","rgbif","readr","purrr","dplyr", "ascii")) | |
| shell: Rscript {0} | |
| - name: build table | |
| run: Rscript build-table-script/R/table.R | |
| # - name: update machine tags | |
| # run: Rscript build-table-script/R/mt.R | |
| - uses: stefanzweifel/git-auto-commit-action@v4 | |
| with: | |
| commit_message: "Automatic update of data table" | |
| commit_user_name: "GitHub Action" | |
| commit_user_email: "[email protected]" |