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Moments segmentation#305

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gatoniel wants to merge 20 commits intomaingatoniel/merge-stardist-masks:mainfrom moments_segmentationgatoniel/merge-stardist-masks:moments_segmentationCopy head branch name to clipboard

+1,582-53

Commits

Commits on Mar 24, 2023

• tracking preprocessing works

  gatoniel

  committed
  3210255

• mypy added

  gatoniel

  committed
  17bc020

Commits on Mar 28, 2023

• post-processing

  gatoniel

  committed
  4826e38

• training and prediction should work

  gatoniel

  committed
  c6ef8e2

• better mypy solution

  gatoniel

  committed
  ea4e0d7

Commits on Mar 29, 2023

• test if saved model is loadable

  gatoniel

  committed
  aabcdb8

• predict not for all timepoints

  gatoniel

  committed
  1ef7a1b

Commits on Apr 4, 2023

• tracking with local displacements

  gatoniel

  committed
  30881c6

• mypy has no complains

  gatoniel

  committed
  a25540e

• all tests successfull

  gatoniel

  committed
  807ea6f

• midpoint calculation was wrong....

  gatoniel

  committed
  51fd83f

• tracking utilities added and calc_midpoints fixed

  gatoniel

  committed
  c56605c

• tracking should work now correctly

  gatoniel

  committed
  ef86b87

Commits on Apr 10, 2023

• segmentation based on center points

  gatoniel

  committed
  ab1e87b

Commits on Apr 13, 2023

• training should work

  gatoniel

  committed
  91f1416

• no print statements needed

  gatoniel

  committed
  d9e34e3

• different loss function

  gatoniel

  committed
  dced6c0

• adjust loss weights

  gatoniel

  committed
  7013578

• no capping of distances when they are no distances

  gatoniel

  committed
  0249a37

Commits on Apr 16, 2023

• better probs and a mask

  gatoniel

  committed
  1cc0602