Fix DatasetClient.show_dataset() for a deleted dataset

galaxyproject · Mar 7, 2024 · 639c4df · 639c4df
1 parent 12929a8
commit 639c4df
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Showing 2 changed files with 9 additions and 3 deletions.
diff --git a/bioblend/_tests/TestGalaxyDatasets.py b/bioblend/_tests/TestGalaxyDatasets.py
@@ -30,7 +30,13 @@ def test_show_nonexistent_dataset(self):
             self.gi.datasets.show_dataset("nonexistent_id")
 
     def test_show_dataset(self):
-        self.gi.datasets.show_dataset(self.dataset_id)
+        dataset = self.gi.datasets.show_dataset(self.dataset_id)
+        assert dataset["id"] == self.dataset_id
+        assert not dataset["deleted"]
+        self.gi.histories.delete_dataset(self.history_id, self.dataset_id)
+        dataset = self.gi.datasets.show_dataset(self.dataset_id)
+        assert dataset["id"] == self.dataset_id
+        assert dataset["deleted"]
 
     def test_download_dataset(self):
         with pytest.raises((TypeError, ConnectionError)):

diff --git a/bioblend/galaxy/datasets/__init__.py b/bioblend/galaxy/datasets/__init__.py
@@ -42,7 +42,7 @@ class DatasetClient(Client):
     def __init__(self, galaxy_instance: "GalaxyInstance") -> None:
         super().__init__(galaxy_instance)
 
-    def show_dataset(self, dataset_id: str, deleted: bool = False, hda_ldda: HdaLdda = "hda") -> Dict[str, Any]:
+    def show_dataset(self, dataset_id: str, hda_ldda: HdaLdda = "hda") -> Dict[str, Any]:
         """
         Get details about a given dataset. This can be a history or a library dataset.
 
@@ -62,7 +62,7 @@ def show_dataset(self, dataset_id: str, deleted: bool = False, hda_ldda: HdaLdda
         params = dict(
             hda_ldda=hda_ldda,
         )
-        return self._get(id=dataset_id, deleted=deleted, params=params)
+        return self._get(id=dataset_id, params=params)
 
     def _initiate_download(
         self, dataset_id: str, stream_content: bool, require_ok_state: bool = True, maxwait: float = 12000