more #219
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| name: genieclust for Python | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.10', '3.11', '3.12', '3.13'] | |
| env: | |
| R_LIBS_SITE: /usr/lib/R/site-library | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get -y upgrade | |
| sudo apt-get -y install libcurl4-openssl-dev python3-rpy2 libmlpack-dev r-base-dev python3-dev pandoc libtirpc-dev | |
| sudo mkdir -p /usr/lib/R/site-library | |
| sudo Rscript -e "install.packages(c('genie', 'Rcpp', 'tinytest', 'roxygen2', 'pkgbuild'), lib='/usr/lib/R/site-library')" | |
| #sudo Rscript -e "devtools::install_github('gagolews/Rd2rst')" | |
| sudo make r | |
| python3 -m venv python-venv | |
| source python-venv/bin/activate | |
| python3 -m pip install --upgrade pip | |
| if [ -f requirements.txt ]; then python3 -m pip install -r requirements.txt --upgrade; fi | |
| python3 -m pip install wheel flake8 pytest --upgrade | |
| python3 -m pip install sphinx numpydoc sphinx_rtd_theme sphinx-bootstrap-theme sphinxcontrib-jsmath sphinxcontrib-bibtex myst_parser --upgrade | |
| python3 -m pip install rpy2 pweave ipython jupyter tabulate --upgrade | |
| - name: Install optional dependencies (nmslib) | |
| continue-on-error: true | |
| run: | | |
| #sudo pip3 install nmslib --upgrade | |
| - name: Install optional dependencies (mlpack) | |
| continue-on-error: true | |
| run: | | |
| #sudo pip3 install mlpack --upgrade | |
| - name: Test and check Python | |
| run: | | |
| source python-venv/bin/activate | |
| python3 -m pip install . | |
| pytest |