Fixed benchmark zoo tests

.github/workflows/ci_with_benchmarks.yml

@@ -37,9 +37,12 @@ jobs:
           sudo apt-get upgrade -y
           sudo apt-get install -y libgl1-mesa-glx libgl1-mesa-dev libglu1-mesa-dev freeglut3-dev libosmesa6 libosmesa6-dev libgles2-mesa-dev libarchive-dev libpangocairo-1.0-0
           mamba activate
-          mamba install -y -c conda-forge moab gmsh python-gmsh cadquery=2.4.0 "openmc=0.14.0=dagmc*nompi*"
+          mamba install -y -c conda-forge "openmc=0.14.0=dagmc*nompi*" moab>=5.3.0 gmsh python-gmsh
           python -m pip install --upgrade pip
-          python -m pip install cad_to_dagmc openmc_data_downloader
+          python -m pip install .
+          python -m pip install cadquery-ocp==7.7.2
+          python -m pip install cadquery==2.4.0
+          python -m pip install openmc_data_downloader
           openmc_data_downloader -l ENDFB-7.1-NNDC -i Fe56 Be9
           git clone https://github.com/fusion-energy/model_benchmark_zoo.git
           cd model_benchmark_zoo

README.md

@@ -31,14 +31,15 @@ Also checkout these other software projects that also create DAGMC geometry [CAD
 
 # Installation prerequisite
 
-In principle, any Conda/Mamba distribution will work. A few Conda/Mamba options are:
-- [Miniforge](https://github.com/conda-forge/miniforge) (recommended as it includes mamba)
-- [Anaconda](https://www.anaconda.com/download)
-- [Miniconda](https://docs.conda.io/en/latest/miniconda.html)
 
 
 # Install using Mamba and pip
 
+In principle, installing any Conda/Mamba distribution will work. A few Conda/Mamba options are:
+- [Miniforge](https://github.com/conda-forge/miniforge) (recommended as it includes mamba)
+- [Anaconda](https://www.anaconda.com/download)
+- [Miniconda](https://docs.conda.io/en/latest/miniconda.html)
+
 This example assumes you have installed the Miniforge option or separately have installed Mamba with ```conda install -c conda-forge mamba -y```
 
 Create a new conda environment, I've chosen Python 3.10 here but newer versions are
@@ -76,6 +77,11 @@ Another option would be to [install OpenMC from source](https://docs.openmc.org/
 
 # Install using Conda and pip
 
+In principle, installing any Conda/Mamba distribution will work. A few Conda/Mamba options are:
+- [Miniforge](https://github.com/conda-forge/miniforge) (recommended as it includes mamba)
+- [Anaconda](https://www.anaconda.com/download)
+- [Miniconda](https://docs.conda.io/en/latest/miniconda.html)
+
 This example uses Conda to install some dependencies that are not available via PyPi.
 
 Create a new conda environment
@@ -98,6 +104,22 @@ Then you can install the cad_to_dagmc package with ```pip```
 pip install cad_to_dagmc
 ```
 
+# Install using pip
+
+It is possible to avoid the use of conda and installing using pip and compiling from source.
+
+First compile MOAB (and install Pymoab) from source
+
+Then install cadquery and ocp using pip
+pip install cadquery-ocp==7.7.2
+pip install cadquery==2.4.0
+
+Then you can install the cad_to_dagmc package with ```pip```
+```bash
+pip install cad_to_dagmc
+```
+
+
 # Usage - with OpenMC
 
 You may also want to install OpenMC with DAGMC to make use of the h5m geometry files produced in simulations. However you could also use other supported particle transport codes such as MCNP, FLUKA and others supported by [DAGMC](https://svalinn.github.io/DAGMC/).