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@fungenomics

Kleinman Lab

Analysis, tools, and software for functional genomics to understand cancer and brain development

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  1. NB-FOXR2 NB-FOXR2 Public

    Analysis for "FOXR2 targets LHX6+/DLX+ neural lineages to drive CNS neuroblastoma" (Jessa*, De Cola*, Chandarana*, et al, Cancer Research, 2024)

    HTML 1

  2. HGG-oncohistones HGG-oncohistones Public

    Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" (Jessa et al, Nature Genetics, 2022)

    HTML 7 2

  3. G34-gliomas G34-gliomas Public

    Cell-of-origin analysis for "Histone H3.3G34-mutant interneuron progenitors co-opt PDGFRA for gliomagenesis" (Chen*, Deshmukh*, Jessa*, Hadjadj*, et al, Cell, 2020)

    HTML

  4. braindex braindex Public

    A web portal for exploring scRNAseq data in the developing brain, including our in-house atlas of the E10-P6 forebrain and brainstem

    R 1

  5. CoRAL CoRAL Public

    R 1

Repositories

Showing 10 of 11 repositories
  • CoRAL Public
    fungenomics/CoRAL’s past year of commit activity
    R 1 Apache-2.0 0 0 0 Updated Nov 8, 2024
  • NB-FOXR2 Public

    Analysis for "FOXR2 targets LHX6+/DLX+ neural lineages to drive CNS neuroblastoma" (Jessa*, De Cola*, Chandarana*, et al, Cancer Research, 2024)

    fungenomics/NB-FOXR2’s past year of commit activity
    HTML 1 GPL-3.0 0 0 0 Updated Nov 5, 2024
  • HGG-oncohistones Public

    Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" (Jessa et al, Nature Genetics, 2022)

    fungenomics/HGG-oncohistones’s past year of commit activity
    HTML 7 GPL-3.0 2 0 0 Updated Oct 17, 2024
  • scCoAnnotate Public archive Forked from HusseinLakkis01/scCoAnnotate

    Pipeline for consensus prediction of cell types in single-cell RNA sequencing data.

    fungenomics/scCoAnnotate’s past year of commit activity
    R 3 Apache-2.0 1 0 0 Updated Sep 30, 2024
  • braindex Public

    A web portal for exploring scRNAseq data in the developing brain, including our in-house atlas of the E10-P6 forebrain and brainstem

    fungenomics/braindex’s past year of commit activity
    R 0 GPL-3.0 1 19 0 Updated Nov 2, 2023
  • G34-gliomas Public

    Cell-of-origin analysis for "Histone H3.3G34-mutant interneuron progenitors co-opt PDGFRA for gliomagenesis" (Chen*, Deshmukh*, Jessa*, Hadjadj*, et al, Cell, 2020)

    fungenomics/G34-gliomas’s past year of commit activity
    HTML 0 0 0 0 Updated Sep 16, 2022
  • sandbox Public

    A sandbox to test our workflow

    fungenomics/sandbox’s past year of commit activity
    R 0 GPL-3.0 0 7 1 Updated Sep 21, 2020
  • cytobox Public

    A toolbox for analysis and highly-customizable visualization of single cell data

    fungenomics/cytobox’s past year of commit activity
    R 4 GPL-3.0 2 1 0 Updated Aug 6, 2020
  • Parameterized_report Public

    Parameterized report and interactive plot introduction and demo

    fungenomics/Parameterized_report’s past year of commit activity
    HTML 0 0 0 0 Updated Jun 19, 2020
  • chromswitch-analysis Public Forked from sjessa/chromswitch-analysis

    Code and data to accompany the chromswitch paper, "chromswitch: A flexible method for detecting chromatin state switches" (Jessa and Kleinman, Bioinformatics, 2018)

    fungenomics/chromswitch-analysis’s past year of commit activity
    R 0 1 0 0 Updated May 24, 2020
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