fix: junctions extractor count overlapping read pairs once #5
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- closes griffithlab#187, implemented by adding set of `reads` to `Junction`, and only incrementing `read_count` if read has not been seen yet - this commit should also increase RegTools speed by removing the barcode updating bottleneck caused by repeatedly copying the barcode map - updated regtools to v1.1.0
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readstoJunction, and only incrementingread_countif read has not been seen yet