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fix: allow newer pybwa #118

Merged
merged 2 commits into from
Jan 28, 2025
Merged

fix: allow newer pybwa #118

merged 2 commits into from
Jan 28, 2025

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znorgaard
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@znorgaard znorgaard commented Jan 28, 2025

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@znorgaard znorgaard requested review from nh13 and tfenne as code owners January 28, 2025 17:23
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codecov bot commented Jan 28, 2025

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 94.96%. Comparing base (adbae97) to head (016c7de).
Report is 1 commits behind head on dev.

Additional details and impacted files
@@            Coverage Diff             @@
##              dev     #118      +/-   ##
==========================================
- Coverage   95.37%   94.96%   -0.42%     
==========================================
  Files          18       16       -2     
  Lines        1493     1411      -82     
  Branches      175      161      -14     
==========================================
- Hits         1424     1340      -84     
- Misses         43       49       +6     
+ Partials       26       22       -4     

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pyproject.toml Show resolved Hide resolved
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@nh13 nh13 left a comment

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I think we have to upgrade to poetry 2 in the pyproject.toml and github actions if you want this

pyproject.toml Outdated
@@ -43,7 +43,7 @@ fgpyo = {git ="https://github.com/fulcrumgenomics/fgpyo" , rev= "c5eb469a4fbe4f2
pysam = "^0.22.1"
ordered-set = "^4.1.0"
primer3-py = "^2.0.3"
pybwa = "1.3.3"
pybwa = "^1.3.3"
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Might as well use the latest version

Suggested change
pybwa = "^1.3.3"
pybwa = "^1.4.4"

@znorgaard znorgaard merged commit b86dbcd into dev Jan 28, 2025
3 checks passed
@znorgaard znorgaard deleted the zn_newer_pybwa branch January 28, 2025 17:53
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2 participants