0.2.1

What's Changed

• Fix coordinate conversion for BEDPE files by @clintval in #40
• Add a description of the toolkit to the README by @clintval in #34

Full Changelog: 0.2.0...0.2.1

Release 0.2.0

What's Changed

• Add a DOI badge by @nh13 in #33
• Update SvPileup.md by @msto in #35
• Update the version of Mill and fixup all compiler warnings by @clintval in #36
• Add a tool to make IGV-compat. BEDPE files from AggregateSvPileup by @clintval in #37

New Contributors

• @msto made their first contribution in #35
• @clintval made their first contribution in #36

Full Changelog: 0.1.1...0.2.0

Release 0.1.1

What's Changed

• Ensure that query range to compute coverage in AggregateSvPileup used is limited to contig start/stop. by @tfenne in #31

Release 0.1.0

What's Changed

• Consider circularity when finding intra-contig breakpoints by @jdidion in #28
• Fix to AggregateSvPileup's documentation of the --bam parameter. by @tfenne in #27
• Explain missing be tags in SvPileup by @nh13 in #29
• Bumped toolkit and dependency versions and resolved resulting issues. by @tfenne in #30

New Contributors

• @jdidion made their first contribution in #28

Full Changelog: 0.0.3...0.1.0

Release 0.0.3

What's Changed

• Fix typo in SvPileulp scaladocs by @nh13 in #21
• feat: propagate left/right target overlap annotations from SvPileup by @nh13 in #22
• feat: add left/right template counts when aggregating pileups by @nh13 in #23

Full Changelog: 0.0.2...0.0.3

Release 0.0.2

What's Changed

• bumping to 0.0.2 by @nh13 in #19
• Add option BED file to SvPileup by @nh13 in #20

Full Changelog: 0.0.1...0.0.2

Release 0.0.1

Initial release!

What's Changed

• Initial bolus of code by @nh13 in #1
• Reducing EvidenceType to [SplitRead, ReadPair], adding lots of tests, support for unpaired data by @tfenne in #4
• Small PR to fix pain points running on Apple silicon. by @tfenne in #5
• Add support for auto-generating docs by @nh13 in #6
• More fixups of SvPileup; transition to using Metrics class; cleanup o… by @tfenne in #7
• Progress logger can count templates with no primary alignment by @pamelarussell in #9
• SvPileup better identifies reads with SV evidence by @nh13 in #8
• AggregateSvPileup initial implementation by @pamelarussell in #10
• Generate docs files by @pamelarussell in #14
• Fix AggregateSvPileup on reads where only one end maps by @nh13 in #17
• Fix Stack overflow for large clusters by @nh13 in #18

New Contributors

• @nh13 made their first contribution in #1
• @pamelarussell made their first contribution in #9

Full Changelog: https://github.com/fulcrumgenomics/fgsv/commits/0.0.1