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Nobody committed Sep 29, 2023
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6 changes: 3 additions & 3 deletions docs/tools/SvPileup.md
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Expand Up @@ -20,11 +20,11 @@ Two output files will be created:
tag.

The `be` SAM tag contains a comma-delimited list of breakpoints to which a given read belongs. Each element is
a semi-colon delimited, with four fields:
semi-colon delimited, with four fields:

1. The unique breakpoint identifier (same identifier found in the tab-delimited output).
2. Either "left" or "right, corresponding to if the read shows evidence of the genomic left or right side of the
breakpoint as found in the breakpoint file (i.e. `left_pos` or `right_pos`).
2. Either "left" or "right, corresponding to whether the read shows evidence of the genomic left or right side of
the breakpoint as found in the breakpoint file (i.e. `left_pos` or `right_pos`).
3. Either "from" or "into", such that when traversing the breakpoint would read through "from" and then into
"into" in the sequencing order of the read pair. For a split-read alignment, the "from" contains the aligned
portion of the read that comes from earlier in the read in sequencing order. For an alignment of a read-pair
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2 changes: 1 addition & 1 deletion docs/tools/index.md
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Expand Up @@ -4,7 +4,7 @@ title: fgsv tools

# fgsv tools

The following tools are available in fgsv version 0.0.2-9cbf8a5.
The following tools are available in fgsv version 0.0.3-4fee506.
## All tools

All tools.
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