POC of a tool to re-pick primary alignments.
0.00% of diff hit (target 80.00%)
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0.00% of diff hit (target 80.00%)
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Check warning on line 44 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala
codecov / codecov/patch
src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L42-L44
Added lines #L42 - L44 were not covered by tests
Check warning on line 49 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala
codecov / codecov/patch
src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L46-L49
Added lines #L46 - L49 were not covered by tests
Check warning on line 53 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala
codecov / codecov/patch
src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L52-L53
Added lines #L52 - L53 were not covered by tests
Check warning on line 57 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala
codecov / codecov/patch
src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L56-L57
Added lines #L56 - L57 were not covered by tests
Check warning on line 63 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala
codecov / codecov/patch
src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L62-L63
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Check warning on line 67 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala
codecov / codecov/patch
src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L65-L67
Added lines #L65 - L67 were not covered by tests
Check warning on line 70 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala
codecov / codecov/patch
src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L69-L70
Added lines #L69 - L70 were not covered by tests
Check warning on line 75 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala
codecov / codecov/patch
src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L73-L75
Added lines #L73 - L75 were not covered by tests
Check warning on line 77 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala
codecov / codecov/patch
src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L77
Added line #L77 was not covered by tests
Check warning on line 83 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala
codecov / codecov/patch
src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L80-L83
Added lines #L80 - L83 were not covered by tests
Check warning on line 91 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala
codecov / codecov/patch
src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L91
Added line #L91 was not covered by tests
Check warning on line 98 in src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala
codecov / codecov/patch
src/main/scala/com/fulcrumgenomics/bam/PickPrimaryAlignment.scala#L96-L98
Added lines #L96 - L98 were not covered by tests