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Release 1.0.0
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@tfenne tfenne released this 06 Aug 19:56
1.0.0
674a41e

Major feature release with the following changes:

Major Changes

  • Cross-building support moved from [2.11, 2.12] -> [2.12, 2.13]
  • Support added for the high-performance Intel Inflator and Deflator for working with gzipped data
  • Significant performance improvements to CallDuplexConsensusReads and the addition of multi-threaded calling
  • A new 100% scala API for reading, writing and working with VCF files

Minor Changes

  • Broken pipes while writing to stdout/stderr will print a concise error instead of a long stack trace
  • Common option to fgbio.jar to set validation stringency when reading/writing SAM/BAM
  • Minor fixes to HapCutToVcf
  • UmiConsensusCaller and related tools now merge platform values in read groups case-insensitively
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