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Add an entrypoint to SamSource for bytes of SAM/BAM/CRAM #760

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@clintval clintval requested review from tfenne and nh13 January 13, 2022 15:14
* @param stringency the validation stringency to apply when reading the data
* @param factory a SAMRecordFactory; MUST return classes that mix in [[SamRecord]]
*/
def apply(
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Unfortunately cannot set defaults here due to multiple apply overloadings.

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src/main/scala/com/fulcrumgenomics/bam/api/SamSource.scala Outdated Show resolved Hide resolved
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Codecov Report

Merging #760 (de512c4) into master (70aab13) will increase coverage by 0.00%.
The diff coverage is 100.00%.

❗ Current head de512c4 differs from pull request most recent head 813e48f. Consider uploading reports for the commit 813e48f to get more accurate results
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@@           Coverage Diff           @@
##           master     #760   +/-   ##
=======================================
  Coverage   95.47%   95.47%           
=======================================
  Files         114      114           
  Lines        6733     6740    +7     
  Branches      429      422    -7     
=======================================
+ Hits         6428     6435    +7     
  Misses        305      305           
Flag Coverage Δ
unittests 95.47% <100.00%> (+<0.01%) ⬆️

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Impacted Files Coverage Δ
.../scala/com/fulcrumgenomics/bam/api/SamSource.scala 96.42% <100.00%> (+1.19%) ⬆️

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@clintval clintval requested a review from nh13 February 1, 2022 21:41
@clintval clintval force-pushed the cv_sam_source_bytes branch from 3854384 to eeb9e83 Compare April 29, 2022 16:38
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Would you be willing to do a re-review?

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3 participants