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Updated version to 2.2.2 Snapshot.
unit tests #1095: Commit 8b6f61f pushed by nh13
January 3, 2024 23:21 6m 22s main
January 3, 2024 23:21 6m 22s
Allow the PairedAssigner to use UMI pairs where one is absent (#954)
unit tests #1094: Commit 97a9e06 pushed by clintval
January 3, 2024 17:42 7m 18s main
January 3, 2024 17:42 7m 18s
Allow the PairedAssigner to use UMI pairs where one is absent
unit tests #1093: Pull request #954 synchronize by clintval
January 3, 2024 03:39 4m 43s cv_absent_umi_in_paired
January 3, 2024 03:39 4m 43s
feat: fallback to fast string splitting
unit tests #1092: Commit f806f57 pushed by clintval
January 3, 2024 03:39 5m 1s cv_absent_umi_in_paired
January 3, 2024 03:39 5m 1s
Allow the PairedAssigner to use UMI pairs where one is absent
unit tests #1091: Pull request #954 synchronize by clintval
December 30, 2023 21:18 4m 33s cv_absent_umi_in_paired
December 30, 2023 21:18 4m 33s
Let the DuplexConsensusCaller support UMI pairs with one absent
unit tests #1090: Commit 9d5a422 pushed by clintval
December 30, 2023 21:18 4m 32s cv_absent_umi_in_paired
December 30, 2023 21:18 4m 32s
Allow the PairedAssigner to use UMI pairs where one is absent
unit tests #1089: Pull request #954 opened by clintval
December 30, 2023 19:53 4m 53s cv_absent_umi_in_paired
December 30, 2023 19:53 4m 53s
Allow the PairedAssigner to use UMI pairs where one is absent
unit tests #1088: Commit d510954 pushed by clintval
December 30, 2023 19:50 4m 58s cv_absent_umi_in_paired
December 30, 2023 19:50 4m 58s
Allow the PairedAssigner to use empty UMIs
unit tests #1087: Commit b1caef3 pushed by clintval
December 30, 2023 19:48 4m 31s cv_absent_umi_in_paired
December 30, 2023 19:48 4m 31s
Allow the PairedAssigner to use empty UMIs
unit tests #1086: Commit 37fffde pushed by clintval
December 30, 2023 19:45 4m 44s cv_absent_umi_in_paired
December 30, 2023 19:45 4m 44s
ZipperBams to produce mate score ("ms") for samtools markdup
unit tests #1085: Pull request #952 synchronize by nh13
December 27, 2023 23:36 4m 48s nh13-patch-1
December 27, 2023 23:36 4m 48s
Update src/main/scala/com/fulcrumgenomics/bam/Bams.scala
unit tests #1084: Commit 2affbac pushed by nh13
December 27, 2023 23:36 4m 44s nh13-patch-1
December 27, 2023 23:36 4m 44s
ZipperBams to produce mate score ("ms") for samtools markdup
unit tests #1083: Pull request #952 synchronize by nh13
December 27, 2023 23:34 1m 24s nh13-patch-1
December 27, 2023 23:34 1m 24s
Update src/main/scala/com/fulcrumgenomics/bam/Bams.scala
unit tests #1082: Commit 7e33b82 pushed by nh13
December 27, 2023 23:34 1m 41s nh13-patch-1
December 27, 2023 23:34 1m 41s
ZipperBams to produce mate score ("ms") for samtools markdup
unit tests #1081: Pull request #952 opened by nh13
December 18, 2023 23:59 4m 40s nh13-patch-1
December 18, 2023 23:59 4m 40s
ZipperBams to produce mate score ("ms") for samtools markdup
unit tests #1080: Commit 6aa20ab pushed by nh13
December 18, 2023 23:59 5m 19s nh13-patch-1
December 18, 2023 23:59 5m 19s
Updated version to 2.2.1 Snapshot.
unit tests #1079: Commit 9c475fd pushed by tfenne
December 8, 2023 23:01 6m 44s main
December 8, 2023 23:01 6m 44s
pages build and deployment
pages-build-deployment #10: by tfenne
December 8, 2023 23:00 56s gh-pages
December 8, 2023 23:00 56s
Bumped version to 2.2.0
unit tests #1078: Commit c668e81 pushed by tfenne
December 8, 2023 22:55 4m 38s 2.2.0
December 8, 2023 22:55 4m 38s
Bumped version to 2.2.0
unit tests #1077: Commit c668e81 pushed by tfenne
December 8, 2023 22:42 7m 48s main
December 8, 2023 22:42 7m 48s
Addition of threading in GroupReadsByUmi and some other performance o…
unit tests #1076: Commit 9bb97ed pushed by tfenne
December 8, 2023 16:56 7m 16s main
December 8, 2023 16:56 7m 16s
Fixing some whitespace
unit tests #1074: Commit f233be2 pushed by tfenne
December 8, 2023 16:51 5m 0s tf_speedup_group_reads
December 8, 2023 16:51 5m 0s
A couple more small optimizations and extended the tests.
unit tests #1072: Commit 226d08b pushed by tfenne
December 8, 2023 16:36 4m 50s tf_speedup_group_reads
December 8, 2023 16:36 4m 50s