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Clarify this is a fork in the main help text (#4)
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Original file line number | Diff line number | Diff line change |
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@@ -30,7 +30,7 @@ | |
#include "utils.h" | ||
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#ifndef PACKAGE_VERSION | ||
#define PACKAGE_VERSION "0.7.18-r1243-dirty" | ||
#define PACKAGE_VERSION "0.7.18-r1243-1" | ||
#endif | ||
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int bwa_fa2pac(int argc, char *argv[]); | ||
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@@ -57,14 +57,16 @@ static int usage() | |
{ | ||
fprintf(stderr, "\n"); | ||
fprintf(stderr, "Program: bwa (alignment via Burrows-Wheeler transformation)\n"); | ||
fprintf(stderr, "Fork: This fork of bwa supports interactive `bwa aln`\n"); | ||
fprintf(stderr, "Version: %s\n", PACKAGE_VERSION); | ||
fprintf(stderr, "Contact: Heng Li <[email protected]>\n\n"); | ||
fprintf(stderr, "Contact: Fulcrum Genomics LLC <[email protected]>\n\n"); | ||
fprintf(stderr, "Usage: bwa <command> [options]\n\n"); | ||
fprintf(stderr, "NOTE: For Bioconda installs replace `bwa` with `bwa-aln-interactive`\n\n"); | ||
fprintf(stderr, "Command: index index sequences in the FASTA format\n"); | ||
fprintf(stderr, " mem BWA-MEM algorithm\n"); | ||
fprintf(stderr, " fastmap identify super-maximal exact matches\n"); | ||
fprintf(stderr, " pemerge merge overlapping paired ends (EXPERIMENTAL)\n"); | ||
fprintf(stderr, " aln gapped/ungapped alignment\n"); | ||
fprintf(stderr, " aln gapped/ungapped alignment (interactive)\n"); | ||
fprintf(stderr, " samse generate alignment (single ended)\n"); | ||
fprintf(stderr, " sampe generate alignment (paired ended)\n"); | ||
fprintf(stderr, " bwasw BWA-SW for long queries (DEPRECATED)\n"); | ||
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