Corrected typo in mummer function call

fritzsedlazeck · Feb 5, 2018 · 0797c9d · 0797c9d
1 parent 030c19d
commit 0797c9d
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/src/SURVIVOR.cpp b/src/SURVIVOR.cpp
@@ -219,7 +219,7 @@ void official_interface(int argc, char *argv[]) {
 	std::cerr << "\tmerge\tCompare or merge VCF files to generate a consensus or multi sample vcf files." << std::endl;
 	std::cerr << "\tfilter\tFilter a vcf file based on size and/or regions to ignore" << std::endl;
 	std::cerr << "\tstats\tReport multipe stats over a VCF file" << std::endl;
-	std::cerr << "\tcompareMUMMer\tAnnotates a VCF file with the breakpoints found with MUMMer (Show-diff)."<< std::endl;
+	std::cerr << "\tcompMUMMer\tAnnotates a VCF file with the breakpoints found with MUMMer (Show-diff)."<< std::endl;
 	std::cerr << std::endl;
 
 

diff --git a/src/analysis_sv/MUMmer_overlap.cpp b/src/analysis_sv/MUMmer_overlap.cpp
@@ -35,7 +35,7 @@ void comp_entries_mummer(std::vector<strvcfentry> & entries, std::string filenam
 	if (found != std::string::npos) {
 		id_denovo = filename.substr(found + 6);
 	} else {
-		cout << "not found" << endl;
+		//cout << "not found" << endl;
 		id_denovo = filename;
 	}