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CI (poetry)

TaskCore transition to NGIO #1152

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TaskCore transition to NGIO

TaskCore transition to NGIO #1152

Workflow file for this run

.github/workflows/ci_poetry.yml at 6bd4000
name: CI (poetry)
on:
push:
branches: ["main"]
pull_request:
branches: ["main"]
jobs:
tests_core:
name: "Core, Python ${{ matrix.python-version }}"
runs-on: ubuntu-22.04
timeout-minutes: 10
strategy:
matrix:
python-version: ["3.10", "3.11", "3.12"]
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 1
- name: Install poetry
run: pipx install poetry==1.8.2
- name: Configure poetry
run: poetry config virtualenvs.in-project true
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Cache poetry virtualenv
uses: actions/cache@v4
with:
path: ./.venv
key: ${{ runner.os }}-python-${{ matrix.python-version }}-venv-${{ hashFiles('**/poetry.lock') }}-tests_core
- name: Install dependencies (without extras)
run: poetry install --with dev --without docs --no-interaction
- name: Test core library with pytest
env:
COVERAGE_FILE: coverage-data-core-${{ matrix.python-version }}
run: poetry run coverage run -m pytest tests --ignore tests/tasks --ignore tests/dev
- name: Upload coverage data
uses: actions/upload-artifact@v4
with:
name: coverage-data-core-${{ matrix.python-version }}
path: coverage-data-core-${{ matrix.python-version }}*
tests_tasks:
name: "Tasks, Python ${{ matrix.python-version }}"
runs-on: ubuntu-22.04
timeout-minutes: 30
strategy:
matrix:
python-version: ["3.9", "3.10", "3.11", "3.12"]
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 1
- name: Install poetry
run: pipx install poetry==1.8.2
- name: Configure poetry
run: poetry config virtualenvs.in-project true
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Cache poetry virtualenv
uses: actions/cache@v4
with:
path: ./.venv
key: ${{ runner.os }}-python-${{ matrix.python-version }}-venv-${{ hashFiles('**/poetry.lock') }}-tests_tasks
- name: Install dependencies (including fractal-tasks extra)
run: poetry install --with dev --without docs --no-interaction -E fractal-tasks
- name: Check manifest task metadata
run: poetry run python fractal_tasks_core/dev/check_manifest.py
- name: Cache Pooch folder
id: cache-pooch-folder
uses: actions/cache@v4
with:
path: ~/.cache/pooch
key: pooch-cache
- name: Test tasks with pytest
env:
COVERAGE_FILE: coverage-data-tasks-${{ matrix.python-version }}
run: poetry run coverage run -m pytest tests/dev tests/tasks -s --log-cli-level info
- name: Upload coverage data
uses: actions/upload-artifact@v4
with:
name: coverage-data-tasks-${{ matrix.python-version }}
path: coverage-data-tasks-${{ matrix.python-version }}*
coverage:
name: Coverage
runs-on: ubuntu-22.04
needs: [tests_core, tests_tasks]
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.10"
- name: Install dependencies
run: python -m pip install --upgrade coverage[toml]
- name: Download data
uses: actions/download-artifact@v4
with:
pattern: coverage-data-*
merge-multiple: true
- name: Combine coverage
# Combines all the downloaded coverage artifacts in a single `.coverage` file,
# which will then be used by `py-cov-action/python-coverage-comment-action`.
# We added this step to replace the variable `MERGE_COVERAGE_FILES: true`
# in the next step, which had started to raise errors
# (https://github.com/fractal-analytics-platform/fractal-server/pull/1725).
run: coverage combine coverage-data-*
- name: Add coverage comment to Pull Requests
id: coverage_comment
uses: py-cov-action/python-coverage-comment-action@v3
with:
GITHUB_TOKEN: ${{ github.token }}
MINIMUM_GREEN: 90
MINIMUM_ORANGE: 60
ANNOTATE_MISSING_LINES: true
ANNOTATION_TYPE: notice